| Title | The importance of an extra loop in B-domain of an alpha-amylase from B. stearothermophilus US100. | | Author(s) | Khemakhem B, Ali MB, Aghajari N, Juy M, Haser R, Bejar S | | Institution | Centre de Biotechnologie de Sfax B.P. " 1177" 3018 Sfax, Tunisia; Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, UMR 5086-CNRS/Université de Lyon, IFR128 "BioSciences Gerland-Lyon Sud", 7 Passage du Vercors, F-69367 Lyon cedex 07, France. | | Source | Biochem Biophys Res Commun 2009 May 4. | | Abstract | To provide insight into the potential role of a loop in domain B of several bacterial alpha-amylases, molecular and structural investigation of B. stearothermophilus alpha-amylase (Amy US100) was used as a model. Combination deletion mutants of G(213), I(214) and G(215), described as a loop-forming on the surface bacterial amylases, were subjected to biochemical and structural investigation. Thermoactivity, thermostability as well calcium requirement were studied for each mutant. Thus, deletion of one residue differently affects only the thermostability. Shortening the loop by deletion of G(213)-I(214) or I(214)-G(215) improved the thermostability and reduces calcium requirement. However, the deletion of three residues has a negative effect on thermostability and reduces the optimal temperature by 17 degrees C. The structural investigation showed that stabilizing deletions contribute to reinforce the architecture of domain B and the active site conformation. The deletion of three residues reduces the flexibility of this region and abolishes a denser hydrogen bond network. | | Language | ENG | | Pub Type(s) | JOURNAL ARTICLE
| | PubMed ID | 19422796 |
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