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Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing.
Mol Biol Evol 2003; 20(7):1028-35MB

Abstract

RNA editing alters genomic nucleotide sequences at the transcript level. In higher plant chloroplasts, C-to-U conversion is known to occur at around 30 specific sites. The tobacco cultivar Nicotiana tabacum is an amphidiploid derived from ancestors of N. sylvestris (maternal) and N. tomentosiformis (paternal). The chloroplast genome of N. tabacum is believed to originate from an ancestor of N. sylvestris. To study the evolution of RNA editing in higher plant chloroplasts, editing sites in the two likely progenitors have first been identified based on those found in N. tabacum. Altogether 34, 33, and 32 editing sites have been found in the chloroplast transcripts from N. tabacum, N. sylvestris, and N. tomentosiformis, respectively. Thirty-one sites are conserved among the three species, whereas remarkable differences are observed in the editing of ndhB and ndhD transcripts. Sites 7 and 8 in ndhB mRNAs are separated only by five nt, and both are edited in N. tabacum and N. sylvestris. However, site 8 is not edited in N. tomentosiformis, indicating that distinct trans-factors are involved in the two editing events. The first site in ndhD mRNAs is edited to produce an AUG start codon in N. sylvestris as well as in N. tabacum but not in N. tomentosiformis, suggesting that a distinct mechanism operates for the translational initiation of N. tomentosiformis ndhD mRNAs. Four to six sites are edited partially in green leaves. Some of these sites may represent evolutionary intermediates in the process of losing editing events.

Authors+Show Affiliations

Graduate School of Natural Sciences, Nagoya City University, Mizuho, Nagoya, Japan.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Comparative Study
Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

12716996

Citation

Sasaki, Tadamasa, et al. "Identification of RNA Editing Sites in Chloroplast Transcripts From the Maternal and Paternal Progenitors of Tobacco (Nicotiana Tabacum): Comparative Analysis Shows the Involvement of Distinct Trans-factors for ndhB Editing." Molecular Biology and Evolution, vol. 20, no. 7, 2003, pp. 1028-35.
Sasaki T, Yukawa Y, Miyamoto T, et al. Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Mol Biol Evol. 2003;20(7):1028-35.
Sasaki, T., Yukawa, Y., Miyamoto, T., Obokata, J., & Sugiura, M. (2003). Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Molecular Biology and Evolution, 20(7), pp. 1028-35.
Sasaki T, et al. Identification of RNA Editing Sites in Chloroplast Transcripts From the Maternal and Paternal Progenitors of Tobacco (Nicotiana Tabacum): Comparative Analysis Shows the Involvement of Distinct Trans-factors for ndhB Editing. Mol Biol Evol. 2003;20(7):1028-35. PubMed PMID: 12716996.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. AU - Sasaki,Tadamasa, AU - Yukawa,Yasushi, AU - Miyamoto,Tetsuya, AU - Obokata,Junichi, AU - Sugiura,Masahiro, Y1 - 2003/04/25/ PY - 2003/4/30/pubmed PY - 2004/3/6/medline PY - 2003/4/30/entrez SP - 1028 EP - 35 JF - Molecular biology and evolution JO - Mol. Biol. Evol. VL - 20 IS - 7 N2 - RNA editing alters genomic nucleotide sequences at the transcript level. In higher plant chloroplasts, C-to-U conversion is known to occur at around 30 specific sites. The tobacco cultivar Nicotiana tabacum is an amphidiploid derived from ancestors of N. sylvestris (maternal) and N. tomentosiformis (paternal). The chloroplast genome of N. tabacum is believed to originate from an ancestor of N. sylvestris. To study the evolution of RNA editing in higher plant chloroplasts, editing sites in the two likely progenitors have first been identified based on those found in N. tabacum. Altogether 34, 33, and 32 editing sites have been found in the chloroplast transcripts from N. tabacum, N. sylvestris, and N. tomentosiformis, respectively. Thirty-one sites are conserved among the three species, whereas remarkable differences are observed in the editing of ndhB and ndhD transcripts. Sites 7 and 8 in ndhB mRNAs are separated only by five nt, and both are edited in N. tabacum and N. sylvestris. However, site 8 is not edited in N. tomentosiformis, indicating that distinct trans-factors are involved in the two editing events. The first site in ndhD mRNAs is edited to produce an AUG start codon in N. sylvestris as well as in N. tabacum but not in N. tomentosiformis, suggesting that a distinct mechanism operates for the translational initiation of N. tomentosiformis ndhD mRNAs. Four to six sites are edited partially in green leaves. Some of these sites may represent evolutionary intermediates in the process of losing editing events. SN - 0737-4038 UR - https://www.unboundmedicine.com/medline/citation/12716996/Identification_of_RNA_editing_sites_in_chloroplast_transcripts_from_the_maternal_and_paternal_progenitors_of_tobacco__Nicotiana_tabacum_:_comparative_analysis_shows_the_involvement_of_distinct_trans_factors_for_ndhB_editing_ L2 - https://academic.oup.com/mbe/article-lookup/doi/10.1093/molbev/msg098 DB - PRIME DP - Unbound Medicine ER -