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Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen.
Acta Crystallogr D Biol Crystallogr. 2004 Apr; 60(Pt 4):788-91.AC

Abstract

The NNA7 Fab fragment recognizes the human glycopeptide N blood-group antigen and has a high affinity for N-type glycophorin A (GPA). To provide insight into how antibodies recognize glycopeptide antigens, soluble Fab fragments were expressed in Escherichia coli, purified and crystallized using the hanging-drop vapor-diffusion method at 293 K. The best crystals were obtained from solutions of PEG monomethyl ether 5000 containing 4-8 mM yttrium chloride (YCl3). This rare-earth ion, which could be substituted with various lanthanides, changed the habit of crystals from multinucleated rods with a diffraction limit of 4.25 A resolution to a diamond-shaped morphology that grew as single crystals and diffracted X-rays to 1.75 A resolution. Data were collected that indicated that the crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 57.9, b = 77.1, c = 118.1 A and one Fab fragment per asymmetric unit. A molecular-replacement solution has been obtained and 86% of the molecule was fitted by use of an automated refinement procedure (ARP).

Authors+Show Affiliations

Department of Pathology and Laboratory of Medicine, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, USA.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, P.H.S.

Language

eng

PubMed ID

15039587

Citation

Song, Shuh Chyung, et al. "Purification, Crystallization and X-ray Diffraction Analysis of a Recombinant Fab That Recognizes a Human Blood-group Antigen." Acta Crystallographica. Section D, Biological Crystallography, vol. 60, no. Pt 4, 2004, pp. 788-91.
Song SC, Xie K, Czerwinski M, et al. Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen. Acta Crystallogr D Biol Crystallogr. 2004;60(Pt 4):788-91.
Song, S. C., Xie, K., Czerwinski, M., Spitalnik, S. L., & Wedekind, J. E. (2004). Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen. Acta Crystallographica. Section D, Biological Crystallography, 60(Pt 4), 788-91.
Song SC, et al. Purification, Crystallization and X-ray Diffraction Analysis of a Recombinant Fab That Recognizes a Human Blood-group Antigen. Acta Crystallogr D Biol Crystallogr. 2004;60(Pt 4):788-91. PubMed PMID: 15039587.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen. AU - Song,Shuh Chyung, AU - Xie,Kefang, AU - Czerwinski,Marcin, AU - Spitalnik,Steven L, AU - Wedekind,Joseph E, Y1 - 2004/03/23/ PY - 2004/01/15/received PY - 2004/02/06/accepted PY - 2004/3/25/pubmed PY - 2004/12/16/medline PY - 2004/3/25/entrez SP - 788 EP - 91 JF - Acta crystallographica. Section D, Biological crystallography JO - Acta Crystallogr D Biol Crystallogr VL - 60 IS - Pt 4 N2 - The NNA7 Fab fragment recognizes the human glycopeptide N blood-group antigen and has a high affinity for N-type glycophorin A (GPA). To provide insight into how antibodies recognize glycopeptide antigens, soluble Fab fragments were expressed in Escherichia coli, purified and crystallized using the hanging-drop vapor-diffusion method at 293 K. The best crystals were obtained from solutions of PEG monomethyl ether 5000 containing 4-8 mM yttrium chloride (YCl3). This rare-earth ion, which could be substituted with various lanthanides, changed the habit of crystals from multinucleated rods with a diffraction limit of 4.25 A resolution to a diamond-shaped morphology that grew as single crystals and diffracted X-rays to 1.75 A resolution. Data were collected that indicated that the crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 57.9, b = 77.1, c = 118.1 A and one Fab fragment per asymmetric unit. A molecular-replacement solution has been obtained and 86% of the molecule was fitted by use of an automated refinement procedure (ARP). SN - 0907-4449 UR - https://www.unboundmedicine.com/medline/citation/15039587/Purification_crystallization_and_X_ray_diffraction_analysis_of_a_recombinant_Fab_that_recognizes_a_human_blood_group_antigen_ DB - PRIME DP - Unbound Medicine ER -