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[Preliminary proteome analysis for Saccharomyces cerevisiae under different culturing conditions].
Sheng Wu Gong Cheng Xue Bao. 2004 May; 20(3):398-402.SW

Abstract

For the investigation of the metabolic regulation of Saccharomyces cerevisiae under different culture conditions, the proteins of cell utilizing various carbon sources were separated by two-dimensional electrophoresis with immobilized pH gradients as the first dimension and SDS-PAGE as the second. Samples were taken in the log phase of batch culture using glucose or lactic acid as carbon source, while another sample was taken from the broth when glucose was consumed up and ethanol accumulated in the previous phase was further metabolized. After electrophoresis, the protein spots were detected by silver-stain in a Hoefer Automated Gel Stainer with a protein silver staining kit. Silver-stained gels were scanned and digitized to create computer images. About 500 protein spots were detected by employing the 2D proteome image analysis system Image Master 2D Elite and SWISS-2DPAGE proteome database. Most of the protein expressed and involved in the glycolysis, pentose phosphate (PP) pathway, anaplerotic pathway, as well as TCA cycle were analyzed. The metabolism regulation of protein level for Saccharomyces cerevisiae under various carbon sources, as well as during different phase of growth, was studied. The expression of several glycolytic enzymes (glk, pgi, pgk, eno, pyk) was up-regulated while the expression of enzymes in oxidative pentose phosphate pathway (zwf, gnd) was down-regulated when ethanol and lactic acid were taken as carbon source. Simultaneously, frucotose 1,6-biphosphatase was found to be up-regulated due to the gluconeogenic requirement. Citrate synthase and Malate dehydrogenase do not exhibit significant difference, indicating TCA cycle is necessary when utilizing glucose, ethanol or lactic acid as carbon source. Thus, the NADPH loss due to the repressed pentose phosphate pathway could be compensated by TCA cycle in cases of ethanol and lactic acid. The expression of malic enzyme and isocitrate lyase are activated to a large extent when metabolizing ethanol, indicating glyoxylate shunt is essential in transferring ethanol to generate four carbon precursors for the biosynthesis and the NADP-dependent malic enzyme could also serve as compensation mechanism for NADPH loss in this case.

Authors+Show Affiliations

Department of Chemical and Biochemical Engineering, Zhejiang University, Hangzhou 310027, China.No affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

chi

PubMed ID

15971613

Citation

Zhang, Hui-Min, et al. "[Preliminary Proteome Analysis for Saccharomyces Cerevisiae Under Different Culturing Conditions]." Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology, vol. 20, no. 3, 2004, pp. 398-402.
Zhang HM, Yao SJ, Peng LF, et al. [Preliminary proteome analysis for Saccharomyces cerevisiae under different culturing conditions]. Sheng Wu Gong Cheng Xue Bao. 2004;20(3):398-402.
Zhang, H. M., Yao, S. J., Peng, L. F., & Shimizu, K. (2004). [Preliminary proteome analysis for Saccharomyces cerevisiae under different culturing conditions]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology, 20(3), 398-402.
Zhang HM, et al. [Preliminary Proteome Analysis for Saccharomyces Cerevisiae Under Different Culturing Conditions]. Sheng Wu Gong Cheng Xue Bao. 2004;20(3):398-402. PubMed PMID: 15971613.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - [Preliminary proteome analysis for Saccharomyces cerevisiae under different culturing conditions]. AU - Zhang,Hui-Min, AU - Yao,Shan-Jing, AU - Peng,Li-Feng, AU - Shimizu,Kazuyuki, PY - 2005/6/24/pubmed PY - 2009/6/24/medline PY - 2005/6/24/entrez SP - 398 EP - 402 JF - Sheng wu gong cheng xue bao = Chinese journal of biotechnology JO - Sheng Wu Gong Cheng Xue Bao VL - 20 IS - 3 N2 - For the investigation of the metabolic regulation of Saccharomyces cerevisiae under different culture conditions, the proteins of cell utilizing various carbon sources were separated by two-dimensional electrophoresis with immobilized pH gradients as the first dimension and SDS-PAGE as the second. Samples were taken in the log phase of batch culture using glucose or lactic acid as carbon source, while another sample was taken from the broth when glucose was consumed up and ethanol accumulated in the previous phase was further metabolized. After electrophoresis, the protein spots were detected by silver-stain in a Hoefer Automated Gel Stainer with a protein silver staining kit. Silver-stained gels were scanned and digitized to create computer images. About 500 protein spots were detected by employing the 2D proteome image analysis system Image Master 2D Elite and SWISS-2DPAGE proteome database. Most of the protein expressed and involved in the glycolysis, pentose phosphate (PP) pathway, anaplerotic pathway, as well as TCA cycle were analyzed. The metabolism regulation of protein level for Saccharomyces cerevisiae under various carbon sources, as well as during different phase of growth, was studied. The expression of several glycolytic enzymes (glk, pgi, pgk, eno, pyk) was up-regulated while the expression of enzymes in oxidative pentose phosphate pathway (zwf, gnd) was down-regulated when ethanol and lactic acid were taken as carbon source. Simultaneously, frucotose 1,6-biphosphatase was found to be up-regulated due to the gluconeogenic requirement. Citrate synthase and Malate dehydrogenase do not exhibit significant difference, indicating TCA cycle is necessary when utilizing glucose, ethanol or lactic acid as carbon source. Thus, the NADPH loss due to the repressed pentose phosphate pathway could be compensated by TCA cycle in cases of ethanol and lactic acid. The expression of malic enzyme and isocitrate lyase are activated to a large extent when metabolizing ethanol, indicating glyoxylate shunt is essential in transferring ethanol to generate four carbon precursors for the biosynthesis and the NADP-dependent malic enzyme could also serve as compensation mechanism for NADPH loss in this case. SN - 1000-3061 UR - https://www.unboundmedicine.com/medline/citation/15971613/[Preliminary_proteome_analysis_for_Saccharomyces_cerevisiae_under_different_culturing_conditions]_ DB - PRIME DP - Unbound Medicine ER -