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GenomeDiagram: a python package for the visualization of large-scale genomic data.
Bioinformatics. 2006 Mar 01; 22(5):616-7.B

Abstract

We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems.

AVAILABILITY

GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages.

SUPPLEMENTARY INFORMATION

A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html.

Authors+Show Affiliations

Plant Pathogen Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK. lpritc@scri.ac.ukNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

16377612

Citation

Pritchard, Leighton, et al. "GenomeDiagram: a Python Package for the Visualization of Large-scale Genomic Data." Bioinformatics (Oxford, England), vol. 22, no. 5, 2006, pp. 616-7.
Pritchard L, White JA, Birch PR, et al. GenomeDiagram: a python package for the visualization of large-scale genomic data. Bioinformatics. 2006;22(5):616-7.
Pritchard, L., White, J. A., Birch, P. R., & Toth, I. K. (2006). GenomeDiagram: a python package for the visualization of large-scale genomic data. Bioinformatics (Oxford, England), 22(5), 616-7.
Pritchard L, et al. GenomeDiagram: a Python Package for the Visualization of Large-scale Genomic Data. Bioinformatics. 2006 Mar 1;22(5):616-7. PubMed PMID: 16377612.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - GenomeDiagram: a python package for the visualization of large-scale genomic data. AU - Pritchard,Leighton, AU - White,Jennifer A, AU - Birch,Paul R J, AU - Toth,Ian K, Y1 - 2005/12/23/ PY - 2005/12/27/pubmed PY - 2006/4/19/medline PY - 2005/12/27/entrez SP - 616 EP - 7 JF - Bioinformatics (Oxford, England) JO - Bioinformatics VL - 22 IS - 5 N2 - UNLABELLED: We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems. AVAILABILITY: GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. SUPPLEMENTARY INFORMATION: A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html. SN - 1367-4803 UR - https://www.unboundmedicine.com/medline/citation/16377612/GenomeDiagram:_a_python_package_for_the_visualization_of_large_scale_genomic_data_ DB - PRIME DP - Unbound Medicine ER -