Tags

Type your tag names separated by a space and hit enter

Efficient implementation of a filtered back-projection algorithm using a voxel-by-voxel approach.
J Struct Biol. 2006 Jun; 154(3):287-96.JS

Abstract

The large amount of image data necessary for high-resolution 3D reconstruction of macromolecular assemblies leads to significant increases in the computational time. One of the most time consuming operations is 3D density map reconstruction, and software optimization can greatly reduce the time required for any given structural study. The majority of algorithms proposed for improving the computational effectiveness of a 3D reconstruction are based on a ray-by-ray projection of each image into the reconstructed volume. In this paper, we propose a novel fast implementation of the "filtered back-projection" algorithm based on a voxel-by-voxel principle. Our version of this implementation has been exhaustively tested using both model and real data. We compared 3D reconstructions obtained by the new approach with results obtained by the filtered Back-Projections algorithm and the Fourier-Bessel algorithm commonly used for reconstructing icosahedral viruses. These computational experiments demonstrate the robustness, reliability, and efficiency of this approach.

Authors+Show Affiliations

Department of Biosciences, Karolinska Institutet, 141 57 Huddinge, Sweden. orlov@titus.u-strasbg.frNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

16690323

Citation

Orlov, Igor M., et al. "Efficient Implementation of a Filtered Back-projection Algorithm Using a Voxel-by-voxel Approach." Journal of Structural Biology, vol. 154, no. 3, 2006, pp. 287-96.
Orlov IM, Morgan DG, Cheng RH. Efficient implementation of a filtered back-projection algorithm using a voxel-by-voxel approach. J Struct Biol. 2006;154(3):287-96.
Orlov, I. M., Morgan, D. G., & Cheng, R. H. (2006). Efficient implementation of a filtered back-projection algorithm using a voxel-by-voxel approach. Journal of Structural Biology, 154(3), 287-96.
Orlov IM, Morgan DG, Cheng RH. Efficient Implementation of a Filtered Back-projection Algorithm Using a Voxel-by-voxel Approach. J Struct Biol. 2006;154(3):287-96. PubMed PMID: 16690323.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Efficient implementation of a filtered back-projection algorithm using a voxel-by-voxel approach. AU - Orlov,Igor M, AU - Morgan,David Gene, AU - Cheng,R Holland, Y1 - 2006/04/18/ PY - 2005/10/03/received PY - 2006/03/11/revised PY - 2006/03/19/accepted PY - 2006/5/13/pubmed PY - 2006/8/15/medline PY - 2006/5/13/entrez SP - 287 EP - 96 JF - Journal of structural biology JO - J Struct Biol VL - 154 IS - 3 N2 - The large amount of image data necessary for high-resolution 3D reconstruction of macromolecular assemblies leads to significant increases in the computational time. One of the most time consuming operations is 3D density map reconstruction, and software optimization can greatly reduce the time required for any given structural study. The majority of algorithms proposed for improving the computational effectiveness of a 3D reconstruction are based on a ray-by-ray projection of each image into the reconstructed volume. In this paper, we propose a novel fast implementation of the "filtered back-projection" algorithm based on a voxel-by-voxel principle. Our version of this implementation has been exhaustively tested using both model and real data. We compared 3D reconstructions obtained by the new approach with results obtained by the filtered Back-Projections algorithm and the Fourier-Bessel algorithm commonly used for reconstructing icosahedral viruses. These computational experiments demonstrate the robustness, reliability, and efficiency of this approach. SN - 1047-8477 UR - https://www.unboundmedicine.com/medline/citation/16690323/Efficient_implementation_of_a_filtered_back_projection_algorithm_using_a_voxel_by_voxel_approach_ DB - PRIME DP - Unbound Medicine ER -