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The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles.
DNA Seq. 2007 Jun; 18(3):169-75.DS

Abstract

The complete nucleotide sequence of the mitochondrial genome for the Senegal sole Solea senegalensis Kaup was determined. The mitochondrial DNA was 16,659 base pairs (bp) in length. Sequence features of the 13 protein-coding genes, two ribosomal RNAs and 22 transfer RNAs are described. The non-coding control region (1017 bp) was compared with those of the closely related soles Solea solea and Solea lascaris. The typical conservative blocks were identified. A cluster of 42 and 22 tandemly arrayed repeats was detected near the 3' end of control region in S. solea and S. lascaris, respectively. On the contrary, only two (93.8% of haplotypes) or three copies (6.2%) of an 8-bp repeated sequence motif was found in S. senegalensis. Phylogenetic analysis showed that 7 out of 9 of haplotypes bearing three copies grouped in a separate cluster. Possible mechanisms influencing the evolution of control region among soles are discussed.

Authors+Show Affiliations

Manchado M
IFAPA centro El Toruño, 11500 El Puerto de Santa María, Cádiz, Spain. manuel.manchado.ext@juntadeandalucia.es
Catanese G
No affiliation info available
Ponce M
No affiliation info available
Funes V
No affiliation info available
Infante C
No affiliation info available

MeSH

AnimalsBase SequenceDNA, MitochondrialEvolution, MolecularFish ProteinsFlatfishesGenes, MitochondrialGenomeLocus Control RegionMolecular Sequence DataPhylogenyRNA, RibosomalRNA, TransferSenegalTandem Repeat Sequences

Pub Type(s)

Comparative Study
Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

17454000

Citation

Manchado, Manuel, et al. "The Complete Mitochondrial Genome of the Senegal Sole, Solea Senegalensis Kaup. Comparative Analysis of Tandem Repeats in the Control Region Among Soles." DNA Sequence : the Journal of DNA Sequencing and Mapping, vol. 18, no. 3, 2007, pp. 169-75.
Manchado M, Catanese G, Ponce M, et al. The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles. DNA Seq. 2007;18(3):169-75.
Manchado, M., Catanese, G., Ponce, M., Funes, V., & Infante, C. (2007). The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles. DNA Sequence : the Journal of DNA Sequencing and Mapping, 18(3), 169-75.
Manchado M, et al. The Complete Mitochondrial Genome of the Senegal Sole, Solea Senegalensis Kaup. Comparative Analysis of Tandem Repeats in the Control Region Among Soles. DNA Seq. 2007;18(3):169-75. PubMed PMID: 17454000.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles. AU - Manchado,Manuel, AU - Catanese,Gaetano, AU - Ponce,Marian, AU - Funes,Victoria, AU - Infante,Carlos, PY - 2007/4/25/pubmed PY - 2007/7/19/medline PY - 2007/4/25/entrez SP - 169 EP - 75 JF - DNA sequence : the journal of DNA sequencing and mapping JO - DNA Seq VL - 18 IS - 3 N2 - The complete nucleotide sequence of the mitochondrial genome for the Senegal sole Solea senegalensis Kaup was determined. The mitochondrial DNA was 16,659 base pairs (bp) in length. Sequence features of the 13 protein-coding genes, two ribosomal RNAs and 22 transfer RNAs are described. The non-coding control region (1017 bp) was compared with those of the closely related soles Solea solea and Solea lascaris. The typical conservative blocks were identified. A cluster of 42 and 22 tandemly arrayed repeats was detected near the 3' end of control region in S. solea and S. lascaris, respectively. On the contrary, only two (93.8% of haplotypes) or three copies (6.2%) of an 8-bp repeated sequence motif was found in S. senegalensis. Phylogenetic analysis showed that 7 out of 9 of haplotypes bearing three copies grouped in a separate cluster. Possible mechanisms influencing the evolution of control region among soles are discussed. SN - 1042-5179 UR - https://www.unboundmedicine.com/medline/citation/17454000/The_complete_mitochondrial_genome_of_the_Senegal_sole_Solea_senegalensis_Kaup__Comparative_analysis_of_tandem_repeats_in_the_control_region_among_soles_ DB - PRIME DP - Unbound Medicine ER -