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Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa.
Mol Plant Microbe Interact. 2007 May; 20(5):534-46.MP

Abstract

DNA polymorphism analysis and pathogenicity assays were used to characterize strains of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola collected from rice leaves in West Africa. Restriction fragment length polymorphism (RFLP), repetitive sequence-based polymerase chain reaction, fluorescent amplified fragment-length polymorphism (FAFLP) analyses were assessed for molecular characterization, while pathogenicity was tested by leaf clipping and leaf infiltration. Dendrograms were generated for the data sets obtained from RFLP analysis and repetitive polymerase chain reaction suggesting that the interrelationships between strains were dependent on the technique used. In all cases, data showed that African strains of X. oryzae pv. oryzae form a group genetically distant from Asian strains. FAFLP analyses separated the X. oryzae strains into three groups with significant bootstrap values. A specific and intriguing feature of African strains of X. oryzae pv. oryzae is a reduction in the number of insertion sequence elements and transcription activator-like (avrBs3/pthA) effector genes, based on the molecular markers employed in the study. In addition, pathogenicity assays conducted with African strains of X. oryzae pv. oryzae on a series of nearly isogenic lines (NILs) identified three new races. Finally, leaf infiltration assays revealed the capacity of African strains of X. oryzae pv. oryzae to induce a nonhost hypersensitive response in Nicotiana benthamiana, in contrast with Asian X. oryzae pv. oryzae and X. oryzae pv. oryzicola strains. Our results reveal substantial differences between genomic characteristics of Asian and African strains of X. oryzae pv. oryzae.

Authors+Show Affiliations

Laboratoire Génome et Développement des Plantes, IRD-CNRS-Universite de Perpignan, Centre IRD, 911 Av Agropolis, BP64501, 34394 Montpellier, France.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

17506331

Citation

Gonzalez, Carolina, et al. "Molecular and Pathotypic Characterization of New Xanthomonas Oryzae Strains From West Africa." Molecular Plant-microbe Interactions : MPMI, vol. 20, no. 5, 2007, pp. 534-46.
Gonzalez C, Szurek B, Manceau C, et al. Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa. Mol Plant Microbe Interact. 2007;20(5):534-46.
Gonzalez, C., Szurek, B., Manceau, C., Mathieu, T., Séré, Y., & Verdier, V. (2007). Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa. Molecular Plant-microbe Interactions : MPMI, 20(5), 534-46.
Gonzalez C, et al. Molecular and Pathotypic Characterization of New Xanthomonas Oryzae Strains From West Africa. Mol Plant Microbe Interact. 2007;20(5):534-46. PubMed PMID: 17506331.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa. AU - Gonzalez,Carolina, AU - Szurek,Boris, AU - Manceau,Charles, AU - Mathieu,Thierry, AU - Séré,Yacouba, AU - Verdier,Valérie, PY - 2007/5/18/pubmed PY - 2007/8/21/medline PY - 2007/5/18/entrez SP - 534 EP - 46 JF - Molecular plant-microbe interactions : MPMI JO - Mol Plant Microbe Interact VL - 20 IS - 5 N2 - DNA polymorphism analysis and pathogenicity assays were used to characterize strains of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola collected from rice leaves in West Africa. Restriction fragment length polymorphism (RFLP), repetitive sequence-based polymerase chain reaction, fluorescent amplified fragment-length polymorphism (FAFLP) analyses were assessed for molecular characterization, while pathogenicity was tested by leaf clipping and leaf infiltration. Dendrograms were generated for the data sets obtained from RFLP analysis and repetitive polymerase chain reaction suggesting that the interrelationships between strains were dependent on the technique used. In all cases, data showed that African strains of X. oryzae pv. oryzae form a group genetically distant from Asian strains. FAFLP analyses separated the X. oryzae strains into three groups with significant bootstrap values. A specific and intriguing feature of African strains of X. oryzae pv. oryzae is a reduction in the number of insertion sequence elements and transcription activator-like (avrBs3/pthA) effector genes, based on the molecular markers employed in the study. In addition, pathogenicity assays conducted with African strains of X. oryzae pv. oryzae on a series of nearly isogenic lines (NILs) identified three new races. Finally, leaf infiltration assays revealed the capacity of African strains of X. oryzae pv. oryzae to induce a nonhost hypersensitive response in Nicotiana benthamiana, in contrast with Asian X. oryzae pv. oryzae and X. oryzae pv. oryzicola strains. Our results reveal substantial differences between genomic characteristics of Asian and African strains of X. oryzae pv. oryzae. SN - 0894-0282 UR - https://www.unboundmedicine.com/medline/citation/17506331/Molecular_and_pathotypic_characterization_of_new_Xanthomonas_oryzae_strains_from_West_Africa_ L2 - https://apsjournals.apsnet.org/doi/10.1094/MPMI-20-5-0534?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub=pubmed DB - PRIME DP - Unbound Medicine ER -