Tags

Type your tag names separated by a space and hit enter

Symmetry-adapted spherical harmonics method for high-resolution 3D single-particle reconstructions.
J Struct Biol. 2008 Jan; 161(1):64-73.JS

Abstract

Three-dimensional (3D) reconstruction is the last and an essential step toward high-resolution structural determination in single-particle cryo-electron microscopy (cryoEM). We have implemented a new algorithm for reconstructing 3D structures of macromolecular complexes with icosahedral symmetry from cryoEM images. Icosahedral symmetry-adapted functions (ISAFs) are used to interpolate structural factors in the reciprocal space to generate a 3D reconstruction in spherical coordinates. In our implementation, we introduced a recursive method for deriving higher order ISAFs from three lower order seed functions. We demonstrate improvements of our new method in both the noise suppression and the effective resolution in 3D reconstruction over the commonly used Fourier-Bessel synthesis method introduced by Crowther et al. three decades ago. Our 3D reconstruction method can be extended to macromolecular complexes with other symmetry types and is thus likely to impact future high-resolution cryoEM single-particle reconstruction efforts in general.

Authors+Show Affiliations

Institute of Modern Physics, Xiangtan University, Xiangtan, Hunan 411105, People's Republic of China.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

17977017

Citation

Liu, Hongrong, et al. "Symmetry-adapted Spherical Harmonics Method for High-resolution 3D Single-particle Reconstructions." Journal of Structural Biology, vol. 161, no. 1, 2008, pp. 64-73.
Liu H, Cheng L, Zeng S, et al. Symmetry-adapted spherical harmonics method for high-resolution 3D single-particle reconstructions. J Struct Biol. 2008;161(1):64-73.
Liu, H., Cheng, L., Zeng, S., Cai, C., Zhou, Z. H., & Yang, Q. (2008). Symmetry-adapted spherical harmonics method for high-resolution 3D single-particle reconstructions. Journal of Structural Biology, 161(1), 64-73.
Liu H, et al. Symmetry-adapted Spherical Harmonics Method for High-resolution 3D Single-particle Reconstructions. J Struct Biol. 2008;161(1):64-73. PubMed PMID: 17977017.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Symmetry-adapted spherical harmonics method for high-resolution 3D single-particle reconstructions. AU - Liu,Hongrong, AU - Cheng,Lingpeng, AU - Zeng,Songjun, AU - Cai,Canying, AU - Zhou,Z Hong, AU - Yang,Qibin, Y1 - 2007/10/01/ PY - 2007/05/08/received PY - 2007/09/11/revised PY - 2007/09/18/accepted PY - 2007/11/3/pubmed PY - 2008/5/31/medline PY - 2007/11/3/entrez SP - 64 EP - 73 JF - Journal of structural biology JO - J Struct Biol VL - 161 IS - 1 N2 - Three-dimensional (3D) reconstruction is the last and an essential step toward high-resolution structural determination in single-particle cryo-electron microscopy (cryoEM). We have implemented a new algorithm for reconstructing 3D structures of macromolecular complexes with icosahedral symmetry from cryoEM images. Icosahedral symmetry-adapted functions (ISAFs) are used to interpolate structural factors in the reciprocal space to generate a 3D reconstruction in spherical coordinates. In our implementation, we introduced a recursive method for deriving higher order ISAFs from three lower order seed functions. We demonstrate improvements of our new method in both the noise suppression and the effective resolution in 3D reconstruction over the commonly used Fourier-Bessel synthesis method introduced by Crowther et al. three decades ago. Our 3D reconstruction method can be extended to macromolecular complexes with other symmetry types and is thus likely to impact future high-resolution cryoEM single-particle reconstruction efforts in general. SN - 1047-8477 UR - https://www.unboundmedicine.com/medline/citation/17977017/Symmetry_adapted_spherical_harmonics_method_for_high_resolution_3D_single_particle_reconstructions_ DB - PRIME DP - Unbound Medicine ER -