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adegenet: a R package for the multivariate analysis of genetic markers.

Abstract

The package adegenet for the R software is dedicated to the multivariate analysis of genetic markers. It extends the ade4 package of multivariate methods by implementing formal classes and functions to manipulate and analyse genetic markers. Data can be imported from common population genetics software and exported to other software and R packages. adegenet also implements standard population genetics tools along with more original approaches for spatial genetics and hybridization.

AVAILABILITY

Stable version is available from CRAN: http://cran.r-project.org/mirrors.html. Development version is available from adegenet website: http://adegenet.r-forge.r-project.org/. Both versions can be installed directly from R. adegenet is distributed under the GNU General Public Licence (v.2).

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  • FREE Publisher Full Text
  • Authors

    Source

    Bioinformatics (Oxford, England) 24:11 2008 Jun 1 pg 1403-5

    MeSH

    Algorithms
    Chromosome Mapping
    Genetic Markers
    Multivariate Analysis
    Programming Languages
    Sequence Alignment
    Sequence Analysis, DNA
    Software

    Pub Type(s)

    Journal Article

    Language

    eng

    PubMed ID

    18397895

    Citation

    TY - JOUR T1 - adegenet: a R package for the multivariate analysis of genetic markers. A1 - Jombart,Thibaut, Y1 - 2008/04/08/ PY - 2008/4/8/aheadofprint PY - 2008/4/10/pubmed PY - 2008/6/11/medline PY - 2008/4/10/entrez SP - 1403 EP - 5 JF - Bioinformatics (Oxford, England) JO - Bioinformatics VL - 24 IS - 11 N2 - UNLABELLED: The package adegenet for the R software is dedicated to the multivariate analysis of genetic markers. It extends the ade4 package of multivariate methods by implementing formal classes and functions to manipulate and analyse genetic markers. Data can be imported from common population genetics software and exported to other software and R packages. adegenet also implements standard population genetics tools along with more original approaches for spatial genetics and hybridization. AVAILABILITY: Stable version is available from CRAN: http://cran.r-project.org/mirrors.html. Development version is available from adegenet website: http://adegenet.r-forge.r-project.org/. Both versions can be installed directly from R. adegenet is distributed under the GNU General Public Licence (v.2). SN - 1367-4811 UR - https://www.unboundmedicine.com/medline/citation/18397895/adegenet:_a_R_package_for_the_multivariate_analysis_of_genetic_markers_ L2 - http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=18397895 ER -