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Sleuthing the difference a nucleotide can make.
Mol Ecol. 2008 Jun; 17(12):2793-5.ME

Abstract

Identifying the genetic basis of natural variation in genome-wide gene expression is a daunting task, yet central to characterizing the potential evolutionary impact of gene expression polymorphism. In this issue, Brown et al. reveal the genetic variation that underlies a significant portion of the gene expression polymorphism that segregates in a natural isolate of the wine and bread yeast Saccharomyces cerevisiae. That polymorphism is shown to be associated with a single nucleotide insertion. Interestingly, the major expression polymorphism is not caused by an insertion in a cis-regulatory region or in a transcription factor, but in a homonucleotide repeat within the coding sequence of SSY1, which encodes an amino acid sensor. The expression polymorphism, perhaps unsurprisingly, is also environment-dependent and leads to differential fitness across environments. The result calls for a deeper consideration within molecular ecological genomics of the gene-by-environment interactions that lead to differential gene expression. The finding also calls for further data, clarifying the kinds of genetic variation that constitute gene expression polymorphism between individuals in natural populations.

Authors+Show Affiliations

Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect Street, New Haven, CT 06520, USA. Jeffrey.Townsend@Yale.edu

Pub Type(s)

Journal Article
Comment

Language

eng

PubMed ID

18565029

Citation

Townsend, Jeffrey P.. "Sleuthing the Difference a Nucleotide Can Make." Molecular Ecology, vol. 17, no. 12, 2008, pp. 2793-5.
Townsend JP. Sleuthing the difference a nucleotide can make. Mol Ecol. 2008;17(12):2793-5.
Townsend, J. P. (2008). Sleuthing the difference a nucleotide can make. Molecular Ecology, 17(12), 2793-5. https://doi.org/10.1111/j.1365-294X.2008.03824.x
Townsend JP. Sleuthing the Difference a Nucleotide Can Make. Mol Ecol. 2008;17(12):2793-5. PubMed PMID: 18565029.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Sleuthing the difference a nucleotide can make. A1 - Townsend,Jeffrey P, PY - 2008/6/21/pubmed PY - 2008/9/9/medline PY - 2008/6/21/entrez SP - 2793 EP - 5 JF - Molecular ecology JO - Mol Ecol VL - 17 IS - 12 N2 - Identifying the genetic basis of natural variation in genome-wide gene expression is a daunting task, yet central to characterizing the potential evolutionary impact of gene expression polymorphism. In this issue, Brown et al. reveal the genetic variation that underlies a significant portion of the gene expression polymorphism that segregates in a natural isolate of the wine and bread yeast Saccharomyces cerevisiae. That polymorphism is shown to be associated with a single nucleotide insertion. Interestingly, the major expression polymorphism is not caused by an insertion in a cis-regulatory region or in a transcription factor, but in a homonucleotide repeat within the coding sequence of SSY1, which encodes an amino acid sensor. The expression polymorphism, perhaps unsurprisingly, is also environment-dependent and leads to differential fitness across environments. The result calls for a deeper consideration within molecular ecological genomics of the gene-by-environment interactions that lead to differential gene expression. The finding also calls for further data, clarifying the kinds of genetic variation that constitute gene expression polymorphism between individuals in natural populations. SN - 1365-294X UR - https://www.unboundmedicine.com/medline/citation/18565029/Sleuthing_the_difference_a_nucleotide_can_make_ L2 - https://doi.org/10.1111/j.1365-294X.2008.03824.x DB - PRIME DP - Unbound Medicine ER -