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The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae.
Gene. 2009 Mar 01; 432(1-2):33-43.GENE

Abstract

To understand the systematic status of Larimichthys crocea in the Percoidei, we determined the complete mitochondrial (mt) genome sequence using 454 sequencing-by-synthesis technology. The complete mt genome is 16,466 bp in length including the typical structure of 22 tRNAs, 2 rRNAs, 13 protein-coding genes and the noncoding control region (CR). Further sequencing for the complete CR was performed using the primers Cyt b-F and 12S-R on six L. crocea individuals and two L. polyactis individuals. Interestingly, all seven CR sequences from L. crocea were identical while the three sequences from L. polyactis were distinct (including one from GenBank). Although the conserved blocks such as TAS and CSB-1, -2, and -3 are readily identifiable in the control regions of the two species, the typical central conserved blocks CSB-D, -E, and -F could not be detected, while they are found in Cynoscion acoupa of Sciaenidae and other Percoidei species. Phylogenetic analysis shows that L. crocea is a relatively recently emerged species in Sciaenidae and this family is closely related to family Pomacanthidae within the Percoidei. L. crocea, as the first species of Sciaenidae with complete mitochondrial genome available, will provide important information on the molecular evolution of the group. Moreover, the genus-specific pair of primers designed in this study for amplifying the complete mt control region will be very useful in studies on the population genetics and conservation biology of Larimichthys.

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Authors+Show Affiliations

Cui Z
EMBL, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.
Liu Y
No affiliation info available
Li CP
No affiliation info available
You F
No affiliation info available
Chu KH
No affiliation info available

MeSH

AnimalsBase SequenceBayes TheoremConserved SequenceCytochromes bDNA, MitochondrialGenetic VariationGenome, MitochondrialLocus Control RegionMolecular Sequence DataPerciformesPhylogenyRNA, Ribosomal, 16SSequence AlignmentSequence Analysis, DNATerminator Regions, Genetic

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

19100818

Citation

Cui, Zhaoxia, et al. "The Complete Mitochondrial Genome of the Large Yellow Croaker, Larimichthys Crocea (Perciformes, Sciaenidae): Unusual Features of Its Control Region and the Phylogenetic Position of the Sciaenidae." Gene, vol. 432, no. 1-2, 2009, pp. 33-43.
Cui Z, Liu Y, Li CP, et al. The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae. Gene. 2009;432(1-2):33-43.
Cui, Z., Liu, Y., Li, C. P., You, F., & Chu, K. H. (2009). The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae. Gene, 432(1-2), 33-43. https://doi.org/10.1016/j.gene.2008.11.024
Cui Z, et al. The Complete Mitochondrial Genome of the Large Yellow Croaker, Larimichthys Crocea (Perciformes, Sciaenidae): Unusual Features of Its Control Region and the Phylogenetic Position of the Sciaenidae. Gene. 2009 Mar 1;432(1-2):33-43. PubMed PMID: 19100818.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae. AU - Cui,Zhaoxia, AU - Liu,Yuan, AU - Li,Chi Pang, AU - You,Feng, AU - Chu,Ka Hou, Y1 - 2008/12/03/ PY - 2008/09/23/received PY - 2008/11/20/revised PY - 2008/11/24/accepted PY - 2008/12/23/entrez PY - 2008/12/23/pubmed PY - 2009/2/21/medline SP - 33 EP - 43 JF - Gene JO - Gene VL - 432 IS - 1-2 N2 - To understand the systematic status of Larimichthys crocea in the Percoidei, we determined the complete mitochondrial (mt) genome sequence using 454 sequencing-by-synthesis technology. The complete mt genome is 16,466 bp in length including the typical structure of 22 tRNAs, 2 rRNAs, 13 protein-coding genes and the noncoding control region (CR). Further sequencing for the complete CR was performed using the primers Cyt b-F and 12S-R on six L. crocea individuals and two L. polyactis individuals. Interestingly, all seven CR sequences from L. crocea were identical while the three sequences from L. polyactis were distinct (including one from GenBank). Although the conserved blocks such as TAS and CSB-1, -2, and -3 are readily identifiable in the control regions of the two species, the typical central conserved blocks CSB-D, -E, and -F could not be detected, while they are found in Cynoscion acoupa of Sciaenidae and other Percoidei species. Phylogenetic analysis shows that L. crocea is a relatively recently emerged species in Sciaenidae and this family is closely related to family Pomacanthidae within the Percoidei. L. crocea, as the first species of Sciaenidae with complete mitochondrial genome available, will provide important information on the molecular evolution of the group. Moreover, the genus-specific pair of primers designed in this study for amplifying the complete mt control region will be very useful in studies on the population genetics and conservation biology of Larimichthys. SN - 1879-0038 UR - https://www.unboundmedicine.com/medline/citation/19100818/The_complete_mitochondrial_genome_of_the_large_yellow_croaker_Larimichthys_crocea__Perciformes_Sciaenidae_:_unusual_features_of_its_control_region_and_the_phylogenetic_position_of_the_Sciaenidae_ L2 - https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(08)00625-2 DB - PRIME DP - Unbound Medicine ER -
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