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Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae).
Mol Phylogenet Evol. 2010 Oct; 57(1):189-214.MP

Abstract

The members of the cyprinid subfamily Danioninae form a diverse and scientifically important group of fishes, which includes the zebrafish, Danio rerio. The diversity of this assemblage has attracted much scientific interest but its monophyly and the relationships among its members are poorly understood. The phylogenetic relationships of the Danioninae are examined herein using sequence data from mitochondrial cytochrome b, mitochondrial cytochrome c oxidase I, nuclear opsin, and nuclear recombination activating gene 1. A combined data matrix of 4117 bp for 270 taxa was compiled and analyzed. The resulting topology supports some conclusions drawn by recent studies on the group and certain portions of the traditional classification, but our results also contradict key aspects of the traditional classification. The subfamily Danioninae is not monophyletic, with putative members scattered throughout Cyprinidae. Therefore, we restrict Danioninae to the monophyletic group that includes the following genera: Amblypharyngodon, Barilius, Cabdio, Chela, Chelaethiops, Danio, Danionella, Devario (including Inlecypris), Esomus, Horadandia, Laubuca, Leptocypris, Luciosoma, Malayochela, Microdevario, Microrasbora, Nematabramis, Neobola, Opsaridium, Opsarius, Paedocypris, Pectenocypris, Raiamas, Rasbora (including Boraras and Trigonostigma), Rasboroides, Salmostoma, Securicula, and Sundadanio. This Danioninae sensu stricto is divided into three major lineages, the tribes Chedrini, Danionini, and Rasborini, where Chedrini is sister to a Danionini-Rasborini clade. Each of these tribes is monophyletic, following the restriction of Danioninae. The tribe Chedrini includes a clade of exclusively African species and contains several genera of uncertain monophyly (Opsarius, Raiamas, Salmostoma). Within the tribe Rasborini, the species-rich genus Rasbora is rendered non-monophyletic by the placement of two monophyletic genera, Boraras and Trigonostigma, hence we synonymize those two genera with Rasbora. In the tribe Danionini, the miniature genus Danionella is recovered as the sister group of Danio, with D. nigrofasciatus sister to D. rerio.

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Authors+Show Affiliations

Tang KL
Saint Louis University, Department of Biology, St. Louis, MO 63103, USA. tangkl@slu.edu
Agnew MK
No affiliation info available
Hirt MV
No affiliation info available
Sado T
No affiliation info available
Schneider LM
No affiliation info available
Freyhof J
No affiliation info available
Sulaiman Z
No affiliation info available
Swartz E
No affiliation info available
Vidthayanon C
No affiliation info available
Miya M
No affiliation info available
Saitoh K
No affiliation info available
Simons AM
No affiliation info available
Wood RM
No affiliation info available
Mayden RL
No affiliation info available

MeSH

AnimalsCell NucleusCyprinidaeDNA, MitochondrialEvolution, MolecularPhylogenySequence Analysis, DNA

Pub Type(s)

Journal Article
Research Support, U.S. Gov't, Non-P.H.S.

Language

eng

PubMed ID

20553898

Citation

Tang, Kevin L., et al. "Systematics of the Subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae)." Molecular Phylogenetics and Evolution, vol. 57, no. 1, 2010, pp. 189-214.
Tang KL, Agnew MK, Hirt MV, et al. Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol. 2010;57(1):189-214.
Tang, K. L., Agnew, M. K., Hirt, M. V., Sado, T., Schneider, L. M., Freyhof, J., Sulaiman, Z., Swartz, E., Vidthayanon, C., Miya, M., Saitoh, K., Simons, A. M., Wood, R. M., & Mayden, R. L. (2010). Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Molecular Phylogenetics and Evolution, 57(1), 189-214. https://doi.org/10.1016/j.ympev.2010.05.021
Tang KL, et al. Systematics of the Subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol. 2010;57(1):189-214. PubMed PMID: 20553898.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). AU - Tang,Kevin L, AU - Agnew,Mary K, AU - Hirt,M Vincent, AU - Sado,Tetsuya, AU - Schneider,Leah M, AU - Freyhof,Jörg, AU - Sulaiman,Zohrah, AU - Swartz,Ernst, AU - Vidthayanon,Chavalit, AU - Miya,Masaki, AU - Saitoh,Kenji, AU - Simons,Andrew M, AU - Wood,Robert M, AU - Mayden,Richard L, Y1 - 2010/05/27/ PY - 2009/11/16/received PY - 2010/05/20/revised PY - 2010/05/20/accepted PY - 2010/6/18/entrez PY - 2010/6/18/pubmed PY - 2010/12/14/medline SP - 189 EP - 214 JF - Molecular phylogenetics and evolution JO - Mol Phylogenet Evol VL - 57 IS - 1 N2 - The members of the cyprinid subfamily Danioninae form a diverse and scientifically important group of fishes, which includes the zebrafish, Danio rerio. The diversity of this assemblage has attracted much scientific interest but its monophyly and the relationships among its members are poorly understood. The phylogenetic relationships of the Danioninae are examined herein using sequence data from mitochondrial cytochrome b, mitochondrial cytochrome c oxidase I, nuclear opsin, and nuclear recombination activating gene 1. A combined data matrix of 4117 bp for 270 taxa was compiled and analyzed. The resulting topology supports some conclusions drawn by recent studies on the group and certain portions of the traditional classification, but our results also contradict key aspects of the traditional classification. The subfamily Danioninae is not monophyletic, with putative members scattered throughout Cyprinidae. Therefore, we restrict Danioninae to the monophyletic group that includes the following genera: Amblypharyngodon, Barilius, Cabdio, Chela, Chelaethiops, Danio, Danionella, Devario (including Inlecypris), Esomus, Horadandia, Laubuca, Leptocypris, Luciosoma, Malayochela, Microdevario, Microrasbora, Nematabramis, Neobola, Opsaridium, Opsarius, Paedocypris, Pectenocypris, Raiamas, Rasbora (including Boraras and Trigonostigma), Rasboroides, Salmostoma, Securicula, and Sundadanio. This Danioninae sensu stricto is divided into three major lineages, the tribes Chedrini, Danionini, and Rasborini, where Chedrini is sister to a Danionini-Rasborini clade. Each of these tribes is monophyletic, following the restriction of Danioninae. The tribe Chedrini includes a clade of exclusively African species and contains several genera of uncertain monophyly (Opsarius, Raiamas, Salmostoma). Within the tribe Rasborini, the species-rich genus Rasbora is rendered non-monophyletic by the placement of two monophyletic genera, Boraras and Trigonostigma, hence we synonymize those two genera with Rasbora. In the tribe Danionini, the miniature genus Danionella is recovered as the sister group of Danio, with D. nigrofasciatus sister to D. rerio. SN - 1095-9513 UR - https://www.unboundmedicine.com/medline/citation/20553898/Systematics_of_the_subfamily_Danioninae__Teleostei:_Cypriniformes:_Cyprinidae__ L2 - https://linkinghub.elsevier.com/retrieve/pii/S1055-7903(10)00240-X DB - PRIME DP - Unbound Medicine ER -