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MMOD: an R library for the calculation of population differentiation statistics.

Abstract

MMOD is a library for the R programming language that allows the calculation of the population differentiation measures D(est), G″(ST) and φ'(ST). R provides a powerful environment in which to conduct and record population genetic analyses but, at present, no R libraries provide functions for the calculation of these statistics from standard population genetic files. In addition to the calculation of differentiation measures, mmod can produce parametric bootstrap and jackknife samples of data sets for further analysis. By integrating with and complimenting the existing libraries adegenet and pegas, mmod extends the power of R as a population genetic platform.

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  • Authors+Show Affiliations

    Department of Zoology, Allan Wilson Centre for Molecular Ecology and Evolution, University of Otago, Dunedin, New Zealand. david.winter@gmail.com

    Source

    Molecular ecology resources 12:6 2012 Nov pg 1158-60

    MeSH

    Computational Biology
    Genetics, Population
    Software
    Statistics as Topic

    Pub Type(s)

    Journal Article

    Language

    eng

    PubMed ID

    22883857

    Citation

    TY - JOUR T1 - MMOD: an R library for the calculation of population differentiation statistics. A1 - Winter,David J, Y1 - 2012/08/08/ PY - 2012/2/8/received PY - 2012/6/27/revised PY - 2012/6/28/accepted PY - 2012/8/8/aheadofprint PY - 2012/8/14/entrez PY - 2012/8/14/pubmed PY - 2013/3/5/medline SP - 1158 EP - 60 JF - Molecular ecology resources JO - Mol Ecol Resour VL - 12 IS - 6 N2 - MMOD is a library for the R programming language that allows the calculation of the population differentiation measures D(est), G″(ST) and φ'(ST). R provides a powerful environment in which to conduct and record population genetic analyses but, at present, no R libraries provide functions for the calculation of these statistics from standard population genetic files. In addition to the calculation of differentiation measures, mmod can produce parametric bootstrap and jackknife samples of data sets for further analysis. By integrating with and complimenting the existing libraries adegenet and pegas, mmod extends the power of R as a population genetic platform. SN - 1755-0998 UR - https://www.unboundmedicine.com/medline/citation/22883857/MMOD:_an_R_library_for_the_calculation_of_population_differentiation_statistics_ L2 - http://openurl.ebscohost.com/linksvc/linking.aspx?genre=article&sid=PubMed&issn=1755-098X&title=Mol Ecol Resour&volume=12&issue=6&spage=1158&atitle=MMOD: an R library for the calculation of population differentiation statistics.&aulast=Winter&date=2012 ER -