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Evidence from principal component analysis for improvement of grain shape- and spikelet morphology-related traits after hexaploid wheat speciation.
Genes Genet Syst. 2012; 87(5):299-310.GG

Abstract

Grain shape and size are involved in the main components of the domestication syndrome in cereals. Wheat grain shape has been dramatically altered at each stage of the domestication of tetraploid wheat and through common wheat speciation. To elucidate the evolutionary change of wheat grain shape, principal component (PC) analysis of grain shape-related traits was first conducted using wild and cultivated tetraploid, synthetic hexaploid, and common wheat accessions. The synthetic hexaploid wheat lines were previously produced through interspecific crosses between two common wheat progenitors, tetraploid wheat and Aegilops tauschii, and produced grains similar to those of cultivated tetraploid wheat. To identify genetic loci related to the difference in grain shape between common wheat and the synthetic wheat, the 15 traits related to grain and spikelet shape were measured in 108 F(2) individuals between Norin 61 and a synthetic wheat line, and the first three PC values for the 15 traits, PC1, PC2 and PC3, were mapped as quantitative traits in the F(2) population. In total, six QTLs, found on chromosomes 1A, 5A, 1D, 2D and 7D, showed significant LOD scores. Among them, a QTL for PC2, located on the 2DS chromosomal region near the Ppd-D1 locus, mainly contributed to the phenotypic difference in grain shape. Tg-D1, controlling tenacious glume phenotype, was located at a similar region to the 2DS QTL, which suggested that the Tg-D1 locus pleiotropically affects not only glume toughness but also spikelet and grain shape in hexaploid wheat. Therefore, it was predicted that wheat grains were rapidly improved toward a shorter and rounder phenotype accompanied with free-threshing wheat formation.

Authors+Show Affiliations

Graduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe 657-8501, Japan.No affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

23412632

Citation

Okamoto, Yuki, et al. "Evidence From Principal Component Analysis for Improvement of Grain Shape- and Spikelet Morphology-related Traits After Hexaploid Wheat Speciation." Genes & Genetic Systems, vol. 87, no. 5, 2012, pp. 299-310.
Okamoto Y, Kajimura T, Ikeda TM, et al. Evidence from principal component analysis for improvement of grain shape- and spikelet morphology-related traits after hexaploid wheat speciation. Genes Genet Syst. 2012;87(5):299-310.
Okamoto, Y., Kajimura, T., Ikeda, T. M., & Takumi, S. (2012). Evidence from principal component analysis for improvement of grain shape- and spikelet morphology-related traits after hexaploid wheat speciation. Genes & Genetic Systems, 87(5), 299-310.
Okamoto Y, et al. Evidence From Principal Component Analysis for Improvement of Grain Shape- and Spikelet Morphology-related Traits After Hexaploid Wheat Speciation. Genes Genet Syst. 2012;87(5):299-310. PubMed PMID: 23412632.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Evidence from principal component analysis for improvement of grain shape- and spikelet morphology-related traits after hexaploid wheat speciation. AU - Okamoto,Yuki, AU - Kajimura,Tomonori, AU - Ikeda,Tatsuya M, AU - Takumi,Shigeo, PY - 2013/2/16/entrez PY - 2013/2/16/pubmed PY - 2013/8/10/medline SP - 299 EP - 310 JF - Genes & genetic systems JO - Genes Genet Syst VL - 87 IS - 5 N2 - Grain shape and size are involved in the main components of the domestication syndrome in cereals. Wheat grain shape has been dramatically altered at each stage of the domestication of tetraploid wheat and through common wheat speciation. To elucidate the evolutionary change of wheat grain shape, principal component (PC) analysis of grain shape-related traits was first conducted using wild and cultivated tetraploid, synthetic hexaploid, and common wheat accessions. The synthetic hexaploid wheat lines were previously produced through interspecific crosses between two common wheat progenitors, tetraploid wheat and Aegilops tauschii, and produced grains similar to those of cultivated tetraploid wheat. To identify genetic loci related to the difference in grain shape between common wheat and the synthetic wheat, the 15 traits related to grain and spikelet shape were measured in 108 F(2) individuals between Norin 61 and a synthetic wheat line, and the first three PC values for the 15 traits, PC1, PC2 and PC3, were mapped as quantitative traits in the F(2) population. In total, six QTLs, found on chromosomes 1A, 5A, 1D, 2D and 7D, showed significant LOD scores. Among them, a QTL for PC2, located on the 2DS chromosomal region near the Ppd-D1 locus, mainly contributed to the phenotypic difference in grain shape. Tg-D1, controlling tenacious glume phenotype, was located at a similar region to the 2DS QTL, which suggested that the Tg-D1 locus pleiotropically affects not only glume toughness but also spikelet and grain shape in hexaploid wheat. Therefore, it was predicted that wheat grains were rapidly improved toward a shorter and rounder phenotype accompanied with free-threshing wheat formation. SN - 1880-5779 UR - https://www.unboundmedicine.com/medline/citation/23412632/Evidence_from_principal_component_analysis_for_improvement_of_grain_shape__and_spikelet_morphology_related_traits_after_hexaploid_wheat_speciation_ L2 - http://japanlinkcenter.org/DN/JST.JSTAGE/ggs/87.299?lang=en&from=PubMed DB - PRIME DP - Unbound Medicine ER -