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The complete mitochondrial genome of Sasakia funebris (Leech) (Lepidoptera: Nymphalidae) and comparison with other Apaturinae insects.
Gene. 2013 Sep 10; 526(2):277-83.GENE

Abstract

Sasakia funebris, a member of the lepidopteran family, Nymphalidae (superfamily Papilionoidea) is a rare species and is found only in some areas of South China. In this study, the 15,233 bp long complete mitochondrial genome of S. funebris was determined, and harbors the gene arrangement identical to all other sequenced lepidopteran insects. The nucleotide composition of the genome is highly A+T biased, accounting for 81.2%. All protein-coding genes (PCGs) start with typical ATN codons, except for COI which begins with the CGA codon. All tRNAs have a typical clover-leaf secondary structure, except for tRNASer(AGN), the dihydrouridine (DHU) arm of which forms a simple loop. The S. funebris A+T-rich region of 370 bp contains several features common to the Lepidoptera insects, including the motif ATAGA followed by a 19 bp poly-T stretch, and two tandem repeats consisting of 18 bp repeat units and 14 bp repeat units. The phylogenetic analyses of Apaturinae based on mitogenome sequences showed: (S. funebris+Sasakia charonda)+(Apatura metis+Apatura ilia). This result is consistent with the morphological classification.

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Authors+Show Affiliations

Wang JP
Institute of Plant Protection, Shanxi Academy of Agriculture Science, Taiyuan 030032, China.
Cao TW
No affiliation info available
Xuan SB
No affiliation info available
Wang H
No affiliation info available
Zhang M
No affiliation info available
Ma Eb
No affiliation info available

MeSH

AnimalsBase CompositionBase SequenceDNA, IntergenicGene OrderGenome, MitochondrialInsectaLepidopteraMolecular Sequence DataOpen Reading FramesPhylogenyRNA, RibosomalRNA, TransferSequence Alignment

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

23742889

Citation

Wang, Ju Ping, et al. "The Complete Mitochondrial Genome of Sasakia Funebris (Leech) (Lepidoptera: Nymphalidae) and Comparison With Other Apaturinae Insects." Gene, vol. 526, no. 2, 2013, pp. 277-83.
Wang JP, Cao TW, Xuan SB, et al. The complete mitochondrial genome of Sasakia funebris (Leech) (Lepidoptera: Nymphalidae) and comparison with other Apaturinae insects. Gene. 2013;526(2):277-83.
Wang, J. P., Cao, T. W., Xuan, S. B., Wang, H., Zhang, M., & Ma, E. b. (2013). The complete mitochondrial genome of Sasakia funebris (Leech) (Lepidoptera: Nymphalidae) and comparison with other Apaturinae insects. Gene, 526(2), 277-83. https://doi.org/10.1016/j.gene.2013.05.036
Wang JP, et al. The Complete Mitochondrial Genome of Sasakia Funebris (Leech) (Lepidoptera: Nymphalidae) and Comparison With Other Apaturinae Insects. Gene. 2013 Sep 10;526(2):277-83. PubMed PMID: 23742889.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - The complete mitochondrial genome of Sasakia funebris (Leech) (Lepidoptera: Nymphalidae) and comparison with other Apaturinae insects. AU - Wang,Ju Ping, AU - Cao,Tian Wen, AU - Xuan,Shan Bin, AU - Wang,Hui, AU - Zhang,Min, AU - Ma,En bo, Y1 - 2013/06/03/ PY - 2013/01/05/received PY - 2013/05/21/accepted PY - 2013/6/8/entrez PY - 2013/6/8/pubmed PY - 2013/10/19/medline KW - A+T-rich region KW - ATP6 KW - ATP8 KW - ATPase subunit 6 KW - ATPase subunit 8 KW - Apaturinae KW - BI KW - Bayesian inference KW - COI–COIII KW - Cytb KW - Lepidoptera KW - Lepidopteran phylogeny KW - ML KW - Maximum likelihood KW - Mitochondrial genome KW - NADH dehydrogenase subunits 1–6 and ND4L KW - ND1–6 and ND4L KW - PCG KW - PCR KW - Sasakia funebris KW - adenine+thymine-rich region KW - base pair(s) KW - bp KW - cytochrome B KW - cytochrome oxidase subunits 1–3 KW - genes encoding for transfer RNA molecules with corresponding amino acids denoted with a three-letter code and anticodon indicated in parentheses (XXX) when necessary KW - kb KW - kilobase KW - large and small subunit of ribosomal RNA genes KW - lrRNA and srRNA KW - mitochondrial DNA KW - mtDNA KW - polymerase chain reaction KW - protein-coding gene KW - tRNA(XXX) SP - 277 EP - 83 JF - Gene JO - Gene VL - 526 IS - 2 N2 - Sasakia funebris, a member of the lepidopteran family, Nymphalidae (superfamily Papilionoidea) is a rare species and is found only in some areas of South China. In this study, the 15,233 bp long complete mitochondrial genome of S. funebris was determined, and harbors the gene arrangement identical to all other sequenced lepidopteran insects. The nucleotide composition of the genome is highly A+T biased, accounting for 81.2%. All protein-coding genes (PCGs) start with typical ATN codons, except for COI which begins with the CGA codon. All tRNAs have a typical clover-leaf secondary structure, except for tRNASer(AGN), the dihydrouridine (DHU) arm of which forms a simple loop. The S. funebris A+T-rich region of 370 bp contains several features common to the Lepidoptera insects, including the motif ATAGA followed by a 19 bp poly-T stretch, and two tandem repeats consisting of 18 bp repeat units and 14 bp repeat units. The phylogenetic analyses of Apaturinae based on mitogenome sequences showed: (S. funebris+Sasakia charonda)+(Apatura metis+Apatura ilia). This result is consistent with the morphological classification. SN - 1879-0038 UR - https://www.unboundmedicine.com/medline/citation/23742889/The_complete_mitochondrial_genome_of_Sasakia_funebris__Leech___Lepidoptera:_Nymphalidae__and_comparison_with_other_Apaturinae_insects_ L2 - https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(13)00672-0 DB - PRIME DP - Unbound Medicine ER -