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Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes.
Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):10800-5.PN

Abstract

Large dsDNA viruses are involved in the population control of many globally distributed species of eukaryotic phytoplankton and have a prominent role in bloom termination. The genus Phaeocystis (Haptophyta, Prymnesiophyceae) includes several high-biomass-forming phytoplankton species, such as Phaeocystis globosa, the blooms of which occur mostly in the coastal zone of the North Atlantic and the North Sea. Here, we report the 459,984-bp-long genome sequence of P. globosa virus strain PgV-16T, encoding 434 proteins and eight tRNAs and, thus, the largest fully sequenced genome to date among viruses infecting algae. Surprisingly, PgV-16T exhibits no phylogenetic affinity with other viruses infecting microalgae (e.g., phycodnaviruses), including those infecting Emiliania huxleyi, another ubiquitous bloom-forming haptophyte. Rather, PgV-16T belongs to an emerging clade (the Megaviridae) clustering the viruses endowed with the largest known genomes, including Megavirus, Mimivirus (both infecting acanthamoeba), and a virus infecting the marine microflagellate grazer Cafeteria roenbergensis. Seventy-five percent of the best matches of PgV-16T-predicted proteins correspond to two viruses [Organic Lake phycodnavirus (OLPV)1 and OLPV2] from a hypersaline lake in Antarctica (Organic Lake), the hosts of which are unknown. As for OLPVs and other Megaviridae, the PgV-16T sequence data revealed the presence of a virophage-like genome. However, no virophage particle was detected in infected P. globosa cultures. The presence of many genes found only in Megaviridae in its genome and the presence of an associated virophage strongly suggest that PgV-16T shares a common ancestry with the largest known dsDNA viruses, the host range of which already encompasses the earliest diverging branches of domain Eukarya.

Authors+Show Affiliations

Structural and Genomic Information Laboratory, Unité Mixte de Recherche 7256, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288 Marseille Cedex 9, France.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

23754393

Citation

Santini, Sebastien, et al. "Genome of Phaeocystis Globosa Virus PgV-16T Highlights the Common Ancestry of the Largest Known DNA Viruses Infecting Eukaryotes." Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 26, 2013, pp. 10800-5.
Santini S, Jeudy S, Bartoli J, et al. Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A. 2013;110(26):10800-5.
Santini, S., Jeudy, S., Bartoli, J., Poirot, O., Lescot, M., Abergel, C., Barbe, V., Wommack, K. E., Noordeloos, A. A., Brussaard, C. P., & Claverie, J. M. (2013). Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proceedings of the National Academy of Sciences of the United States of America, 110(26), 10800-5. https://doi.org/10.1073/pnas.1303251110
Santini S, et al. Genome of Phaeocystis Globosa Virus PgV-16T Highlights the Common Ancestry of the Largest Known DNA Viruses Infecting Eukaryotes. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10800-5. PubMed PMID: 23754393.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. AU - Santini,Sebastien, AU - Jeudy,Sandra, AU - Bartoli,Julia, AU - Poirot,Olivier, AU - Lescot,Magali, AU - Abergel,Chantal, AU - Barbe,Valérie, AU - Wommack,K Eric, AU - Noordeloos,Anna A M, AU - Brussaard,Corina P D, AU - Claverie,Jean-Michel, Y1 - 2013/06/10/ PY - 2013/6/12/entrez PY - 2013/6/12/pubmed PY - 2013/9/7/medline KW - core gene KW - gene duplication KW - giant virus KW - horizontal gene transfer KW - mobile element SP - 10800 EP - 5 JF - Proceedings of the National Academy of Sciences of the United States of America JO - Proc Natl Acad Sci U S A VL - 110 IS - 26 N2 - Large dsDNA viruses are involved in the population control of many globally distributed species of eukaryotic phytoplankton and have a prominent role in bloom termination. The genus Phaeocystis (Haptophyta, Prymnesiophyceae) includes several high-biomass-forming phytoplankton species, such as Phaeocystis globosa, the blooms of which occur mostly in the coastal zone of the North Atlantic and the North Sea. Here, we report the 459,984-bp-long genome sequence of P. globosa virus strain PgV-16T, encoding 434 proteins and eight tRNAs and, thus, the largest fully sequenced genome to date among viruses infecting algae. Surprisingly, PgV-16T exhibits no phylogenetic affinity with other viruses infecting microalgae (e.g., phycodnaviruses), including those infecting Emiliania huxleyi, another ubiquitous bloom-forming haptophyte. Rather, PgV-16T belongs to an emerging clade (the Megaviridae) clustering the viruses endowed with the largest known genomes, including Megavirus, Mimivirus (both infecting acanthamoeba), and a virus infecting the marine microflagellate grazer Cafeteria roenbergensis. Seventy-five percent of the best matches of PgV-16T-predicted proteins correspond to two viruses [Organic Lake phycodnavirus (OLPV)1 and OLPV2] from a hypersaline lake in Antarctica (Organic Lake), the hosts of which are unknown. As for OLPVs and other Megaviridae, the PgV-16T sequence data revealed the presence of a virophage-like genome. However, no virophage particle was detected in infected P. globosa cultures. The presence of many genes found only in Megaviridae in its genome and the presence of an associated virophage strongly suggest that PgV-16T shares a common ancestry with the largest known dsDNA viruses, the host range of which already encompasses the earliest diverging branches of domain Eukarya. SN - 1091-6490 UR - https://www.unboundmedicine.com/medline/citation/23754393/Genome_of_Phaeocystis_globosa_virus_PgV_16T_highlights_the_common_ancestry_of_the_largest_known_DNA_viruses_infecting_eukaryotes_ L2 - http://www.pnas.org/cgi/pmidlookup?view=long&pmid=23754393 DB - PRIME DP - Unbound Medicine ER -