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Genome-wide identification and expression profile of homeodomain-leucine zipper Class I gene family in Cucumis sativus.
Gene. 2013 Dec 01; 531(2):279-87.GENE

Abstract

The HD-Zip proteins comprise one of the largest families of transcription factors in plants. HD-Zip genes have been grouped into four different classes: HD-Zip I to IV. In this study, we described the identification and structural characterization of Class I HD-Zip genes in cucumber. A complete set of 13 HD-Zip I genes were identified in the cucumber genome using Blast search tools and phylogeny. The cucumber HD-Zip I family contained a smaller number of identified genes compared to other higher plants such as Arabidopsis and maize due to the absence of recent gene duplication events. Chromosomal location of these genes revealed that they are distributed unevenly across 5 of 7 chromosomes. Tissue-specific expression profiles showed that 13 cucumber HD-Zip I genes were expressed in at least one of the tissues, which suggested that cucumber HD-Zip I genes took part in many cellular processes. The transcript abundance level analysis during abiotic stress conditions (NaCl, ABA and low temperature treatments) identified a group of HD-Zip I genes that responded to one or more treatments.

Authors+Show Affiliations

State Key Laboratory of Crop Biology, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Huanghuai Region), Ministry of Agriculture, PR China; College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, Shandong 271018, PR China.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

24013079

Citation

Liu, Wei, et al. "Genome-wide Identification and Expression Profile of Homeodomain-leucine Zipper Class I Gene Family in Cucumis Sativus." Gene, vol. 531, no. 2, 2013, pp. 279-87.
Liu W, Fu R, Li Q, et al. Genome-wide identification and expression profile of homeodomain-leucine zipper Class I gene family in Cucumis sativus. Gene. 2013;531(2):279-87.
Liu, W., Fu, R., Li, Q., Li, J., Wang, L., & Ren, Z. (2013). Genome-wide identification and expression profile of homeodomain-leucine zipper Class I gene family in Cucumis sativus. Gene, 531(2), 279-87. https://doi.org/10.1016/j.gene.2013.08.089
Liu W, et al. Genome-wide Identification and Expression Profile of Homeodomain-leucine Zipper Class I Gene Family in Cucumis Sativus. Gene. 2013 Dec 1;531(2):279-87. PubMed PMID: 24013079.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Genome-wide identification and expression profile of homeodomain-leucine zipper Class I gene family in Cucumis sativus. AU - Liu,Wei, AU - Fu,Rao, AU - Li,Qiang, AU - Li,Jing, AU - Wang,Lina, AU - Ren,Zhonghai, Y1 - 2013/09/05/ PY - 2013/03/15/received PY - 2013/08/17/revised PY - 2013/08/28/accepted PY - 2013/9/10/entrez PY - 2013/9/10/pubmed PY - 2013/12/24/medline KW - ABA KW - ABA-responsive Elements KW - ABRE KW - ATHB KW - Abscisic acid KW - Arabidopsis thalianahomeobox KW - BLAST KW - Basic Local Alignment Search Tool KW - CsHDZ I KW - Cucumber KW - Cucumis sativus HD-Zip I KW - Expression profile KW - HB KW - HD-Zip KW - HD-Zip I KW - Homeobox KW - Homeodomain-leucine zipper KW - LTRE KW - Low Temperature-Responsive Elements KW - ML KW - Maximum likelihood KW - PCR KW - Phylogenetic analysis KW - Polymerase chain reaction KW - Promoters KW - RT KW - Reverse transcription SP - 279 EP - 87 JF - Gene JO - Gene VL - 531 IS - 2 N2 - The HD-Zip proteins comprise one of the largest families of transcription factors in plants. HD-Zip genes have been grouped into four different classes: HD-Zip I to IV. In this study, we described the identification and structural characterization of Class I HD-Zip genes in cucumber. A complete set of 13 HD-Zip I genes were identified in the cucumber genome using Blast search tools and phylogeny. The cucumber HD-Zip I family contained a smaller number of identified genes compared to other higher plants such as Arabidopsis and maize due to the absence of recent gene duplication events. Chromosomal location of these genes revealed that they are distributed unevenly across 5 of 7 chromosomes. Tissue-specific expression profiles showed that 13 cucumber HD-Zip I genes were expressed in at least one of the tissues, which suggested that cucumber HD-Zip I genes took part in many cellular processes. The transcript abundance level analysis during abiotic stress conditions (NaCl, ABA and low temperature treatments) identified a group of HD-Zip I genes that responded to one or more treatments. SN - 1879-0038 UR - https://www.unboundmedicine.com/medline/citation/24013079/Genome_wide_identification_and_expression_profile_of_homeodomain_leucine_zipper_Class_I_gene_family_in_Cucumis_sativus_ L2 - https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(13)01164-5 DB - PRIME DP - Unbound Medicine ER -