Citation
Milano, Ilaria, et al. "Outlier SNP Markers Reveal Fine-scale Genetic Structuring Across European Hake Populations (Merluccius Merluccius)." Molecular Ecology, vol. 23, no. 1, 2014, pp. 118-35.
Milano I, Babbucci M, Cariani A, et al. Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius). Mol Ecol. 2014;23(1):118-35.
Milano, I., Babbucci, M., Cariani, A., Atanassova, M., Bekkevold, D., Carvalho, G. R., Espiñeira, M., Fiorentino, F., Garofalo, G., Geffen, A. J., Hansen, J. H., Helyar, S. J., Nielsen, E. E., Ogden, R., Patarnello, T., Stagioni, M., Tinti, F., & Bargelloni, L. (2014). Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius). Molecular Ecology, 23(1), 118-35. https://doi.org/10.1111/mec.12568
Milano I, et al. Outlier SNP Markers Reveal Fine-scale Genetic Structuring Across European Hake Populations (Merluccius Merluccius). Mol Ecol. 2014;23(1):118-35. PubMed PMID: 24138219.
TY - JOUR
T1 - Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius).
AU - Milano,Ilaria,
AU - Babbucci,Massimiliano,
AU - Cariani,Alessia,
AU - Atanassova,Miroslava,
AU - Bekkevold,Dorte,
AU - Carvalho,Gary R,
AU - Espiñeira,Montserrat,
AU - Fiorentino,Fabio,
AU - Garofalo,Germana,
AU - Geffen,Audrey J,
AU - Hansen,Jakob H,
AU - Helyar,Sarah J,
AU - Nielsen,Einar E,
AU - Ogden,Rob,
AU - Patarnello,Tomaso,
AU - Stagioni,Marco,
AU - ,,
AU - Tinti,Fausto,
AU - Bargelloni,Luca,
Y1 - 2013/11/18/
PY - 2013/07/23/received
PY - 2013/10/14/revised
PY - 2013/10/16/accepted
PY - 2013/10/22/entrez
PY - 2013/10/22/pubmed
PY - 2014/3/29/medline
KW - environmental correlation
KW - genome scan
KW - local adaptation
KW - outlier SNPs
KW - salinity
KW - temperature
SP - 118
EP - 35
JF - Molecular ecology
JO - Mol Ecol
VL - 23
IS - 1
N2 - Shallow population structure is generally reported for most marine fish and explained as a consequence of high dispersal, connectivity and large population size. Targeted gene analyses and more recently genome-wide studies have challenged such view, suggesting that adaptive divergence might occur even when neutral markers provide genetic homogeneity across populations. Here, 381 SNPs located in transcribed regions were used to assess large- and fine-scale population structure in the European hake (Merluccius merluccius), a widely distributed demersal species of high priority for the European fishery. Analysis of 850 individuals from 19 locations across the entire distribution range showed evidence for several outlier loci, with significantly higher resolving power. While 299 putatively neutral SNPs confirmed the genetic break between basins (F(CT) = 0.016) and weak differentiation within basins, outlier loci revealed a dramatic divergence between Atlantic and Mediterranean populations (F(CT) range 0.275-0.705) and fine-scale significant population structure. Outlier loci separated North Sea and Northern Portugal populations from all other Atlantic samples and revealed a strong differentiation among Western, Central and Eastern Mediterranean geographical samples. Significant correlation of allele frequencies at outlier loci with seawater surface temperature and salinity supported the hypothesis that populations might be adapted to local conditions. Such evidence highlights the importance of integrating information from neutral and adaptive evolutionary patterns towards a better assessment of genetic diversity. Accordingly, the generated outlier SNP data could be used for tackling illegal practices in hake fishing and commercialization as well as to develop explicit spatial models for defining management units and stock boundaries.
SN - 1365-294X
UR - https://www.unboundmedicine.com/medline/citation/24138219/Outlier_SNP_markers_reveal_fine_scale_genetic_structuring_across_European_hake_populations__Merluccius_merluccius__
L2 - https://doi.org/10.1111/mec.12568
DB - PRIME
DP - Unbound Medicine
ER -
