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Genome-wide identification and analysis of FK506-binding protein gene family in peach (Prunus persica).
Gene. 2014 Feb 25; 536(2):416-24.GENE

Abstract

The FKBP protein family has prolyl isomerase activity and is related in function to cyclophilins. FKBPs are known to be involved in many biological processes including hormone signaling, plant growth, and stress responses through a chaperone or an isomerization of proline residues during protein folding. The availability of complete peach genome sequences allowed the identification of 21 FKBP genes by HMMER and BLAST analyses. Scaffold locations of these FKBP genes in the peach genome were determined and the protein domain and motif organization of peach FKBPs were analyzed. The phylogenetic relationships between peach FKBPs were also assessed. The expression profiles of peach FKBP gene results revealed that most peach FKBPs were expressed in all tissues, while a few peach FKBPs were specifically expressed in some of the tissues. This data could contribute to better understanding of the complex regulation of the peach FKBP gene family, and also provide valuable information for further research in peach functional genomics.

Authors+Show Affiliations

College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China. Electronic address: wangchen@njau.edu.cn.

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

24342662

Citation

Zhang, Yanping, et al. "Genome-wide Identification and Analysis of FK506-binding Protein Gene Family in Peach (Prunus Persica)." Gene, vol. 536, no. 2, 2014, pp. 416-24.
Zhang Y, Han J, Liu D, et al. Genome-wide identification and analysis of FK506-binding protein gene family in peach (Prunus persica). Gene. 2014;536(2):416-24.
Zhang, Y., Han, J., Liu, D., Wen, X., Li, Y., Tao, R., Peng, Y., Fang, J., & Wang, C. (2014). Genome-wide identification and analysis of FK506-binding protein gene family in peach (Prunus persica). Gene, 536(2), 416-24. https://doi.org/10.1016/j.gene.2013.10.059
Zhang Y, et al. Genome-wide Identification and Analysis of FK506-binding Protein Gene Family in Peach (Prunus Persica). Gene. 2014 Feb 25;536(2):416-24. PubMed PMID: 24342662.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Genome-wide identification and analysis of FK506-binding protein gene family in peach (Prunus persica). AU - Zhang,Yanping, AU - Han,Jan, AU - Liu,Dan, AU - Wen,Xicheng, AU - Li,Yu, AU - Tao,Ran, AU - Peng,Yongbin, AU - Fang,Jinggui, AU - Wang,Chen, Y1 - 2013/12/14/ PY - 2013/08/28/received PY - 2013/10/23/revised PY - 2013/10/28/accepted PY - 2013/12/18/entrez PY - 2013/12/18/pubmed PY - 2014/4/29/medline KW - Bioinformatics analysis KW - CDS KW - CaM-BDs KW - ER KW - FK506-binding domain KW - FK506-binding proteins KW - FKBPs KW - FKBd KW - HSP90 KW - MD KW - PPIase KW - Peach KW - RT-PCR KW - SD KW - Sequence express analysis KW - TPR KW - calmodulin-binding domains KW - coding sequence KW - endoplasmic reticulum KW - heat streak protein 90 KW - multidomain KW - peptidyl-prolylcis-trans isomerase KW - qRT-PCR KW - quantitative real-time PCR KW - semi-quantitative reverse transcription PCR KW - single-domain KW - tetratricopeptide repeat SP - 416 EP - 24 JF - Gene JO - Gene VL - 536 IS - 2 N2 - The FKBP protein family has prolyl isomerase activity and is related in function to cyclophilins. FKBPs are known to be involved in many biological processes including hormone signaling, plant growth, and stress responses through a chaperone or an isomerization of proline residues during protein folding. The availability of complete peach genome sequences allowed the identification of 21 FKBP genes by HMMER and BLAST analyses. Scaffold locations of these FKBP genes in the peach genome were determined and the protein domain and motif organization of peach FKBPs were analyzed. The phylogenetic relationships between peach FKBPs were also assessed. The expression profiles of peach FKBP gene results revealed that most peach FKBPs were expressed in all tissues, while a few peach FKBPs were specifically expressed in some of the tissues. This data could contribute to better understanding of the complex regulation of the peach FKBP gene family, and also provide valuable information for further research in peach functional genomics. SN - 1879-0038 UR - https://www.unboundmedicine.com/medline/citation/24342662/Genome_wide_identification_and_analysis_of_FK506_binding_protein_gene_family_in_peach__Prunus_persica__ L2 - https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(13)01468-6 DB - PRIME DP - Unbound Medicine ER -