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Complete mitochondrial genome of the stonefly Cryptoperla stilifera Sivec (Plecoptera: Peltoperlidae) and the phylogeny of Polyneopteran insects.
Gene. 2014 Mar 10; 537(2):177-83.GENE

Abstract

We present the complete mitogenome of a stonefly, Cryptoperla stilifera Sivec (Plecoptera; Peltoperlidae). The mitogenome was a circular molecule consisting of 15,633 nucleotides, 37 genes and a A+T-rich region. C. stilifera mitogenome was similar to Pteronarcys princeps mitogenome (Plecoptera; Pteronarcyidae). All transfer RNA genes (tRNAs) had typical cloverleaf secondary structures except for trnSer (AGN), where the stem-loop structure of the dihydrouridine (DHU) arm was missing. The A+T-rich region of C. stilifera had two stem-loops and each had two interlink. Three conserved sequence blocks (CSBs) were present in the A+T-rich regions of C. stilifera, Peltoperla tarteri and Peltoperla arcuata. Moreover, many polynucleotide stretches (Poly N, N=A, T and C) in the A+T-rich region of C. stilifera Phylogenetic relationships of Polyneopteran species were constructed based on the nucleotide sequences of 13 protein coding genes (PCGs). Both maximum likelihood (ML) and Bayesian inference (BI) analyses supported Grylloblattodea as the sister group to Plecoptera+Dermaptera and Embiidina and Phasmatodea as sister groups.

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Publisher Full Text (DOI)

Authors+Show Affiliations

Wu HY
School of Horticulture and Plant Protection & Institute of Applied Entomology, Yangzhou University, Yangzhou 225009, China; School of Biological Science and Technology, Yangzhou University, Yangzhou 225009, China.
Ji XY
School of Horticulture and Plant Protection & Institute of Applied Entomology, Yangzhou University, Yangzhou 225009, China.
Yu WW
School of Horticulture and Plant Protection & Institute of Applied Entomology, Yangzhou University, Yangzhou 225009, China.
Du YZ
School of Horticulture and Plant Protection & Institute of Applied Entomology, Yangzhou University, Yangzhou 225009, China. Electronic address: yzdu@yzu.edu.cn.

MeSH

AnimalsBase SequenceBayes TheoremCodonGenome, MitochondrialInsectaLocus Control RegionMolecular Sequence DataNucleic Acid ConformationPhylogenyRNARNA, Transfer

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

24412485

Citation

Wu, Hai-Yan, et al. "Complete Mitochondrial Genome of the Stonefly Cryptoperla Stilifera Sivec (Plecoptera: Peltoperlidae) and the Phylogeny of Polyneopteran Insects." Gene, vol. 537, no. 2, 2014, pp. 177-83.
Wu HY, Ji XY, Yu WW, et al. Complete mitochondrial genome of the stonefly Cryptoperla stilifera Sivec (Plecoptera: Peltoperlidae) and the phylogeny of Polyneopteran insects. Gene. 2014;537(2):177-83.
Wu, H. Y., Ji, X. Y., Yu, W. W., & Du, Y. Z. (2014). Complete mitochondrial genome of the stonefly Cryptoperla stilifera Sivec (Plecoptera: Peltoperlidae) and the phylogeny of Polyneopteran insects. Gene, 537(2), 177-83. https://doi.org/10.1016/j.gene.2013.12.044
Wu HY, et al. Complete Mitochondrial Genome of the Stonefly Cryptoperla Stilifera Sivec (Plecoptera: Peltoperlidae) and the Phylogeny of Polyneopteran Insects. Gene. 2014 Mar 10;537(2):177-83. PubMed PMID: 24412485.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Complete mitochondrial genome of the stonefly Cryptoperla stilifera Sivec (Plecoptera: Peltoperlidae) and the phylogeny of Polyneopteran insects. AU - Wu,Hai-Yan, AU - Ji,Xiao-Yu, AU - Yu,Wei-Wei, AU - Du,Yu-Zhou, Y1 - 2014/01/08/ PY - 2013/07/29/received PY - 2013/12/15/revised PY - 2013/12/17/accepted PY - 2014/1/14/entrez PY - 2014/1/15/pubmed PY - 2014/6/25/medline KW - ATP6 and ATP8 KW - BI KW - Base pair (s) KW - Bayesian inference KW - C. stilifera KW - COI-III KW - CR KW - CSBs KW - Conserved sequence blocks KW - Control region KW - CytB KW - Gene encoding for cytochrome oxidase b KW - Genes encoding for ATP synthase subunits 6 and 8 KW - Genes encoding for NADH dehydrogenase subunits 1–6 and 4L KW - Genes encoding for cytochrome c oxidase subunits I–III KW - Large and small subunits of ribosomal RNA KW - ML KW - Mitochondrial DNA KW - Mitochondrial genomics KW - Molecular phylogeny KW - ND1-6 and ND4L KW - PCG(s) KW - PCR KW - Plecoptera KW - Polymerase chain reaction KW - Polyneoptera KW - Protein coding gene(s) KW - SSU rRNA KW - bp KW - lrRNA and srRNA KW - maximum likelihood KW - mtDNA KW - nuclear small subunit ribosomal RNA KW - tRNA(s) KW - transfer RNA (genes) SP - 177 EP - 83 JF - Gene JO - Gene VL - 537 IS - 2 N2 - We present the complete mitogenome of a stonefly, Cryptoperla stilifera Sivec (Plecoptera; Peltoperlidae). The mitogenome was a circular molecule consisting of 15,633 nucleotides, 37 genes and a A+T-rich region. C. stilifera mitogenome was similar to Pteronarcys princeps mitogenome (Plecoptera; Pteronarcyidae). All transfer RNA genes (tRNAs) had typical cloverleaf secondary structures except for trnSer (AGN), where the stem-loop structure of the dihydrouridine (DHU) arm was missing. The A+T-rich region of C. stilifera had two stem-loops and each had two interlink. Three conserved sequence blocks (CSBs) were present in the A+T-rich regions of C. stilifera, Peltoperla tarteri and Peltoperla arcuata. Moreover, many polynucleotide stretches (Poly N, N=A, T and C) in the A+T-rich region of C. stilifera Phylogenetic relationships of Polyneopteran species were constructed based on the nucleotide sequences of 13 protein coding genes (PCGs). Both maximum likelihood (ML) and Bayesian inference (BI) analyses supported Grylloblattodea as the sister group to Plecoptera+Dermaptera and Embiidina and Phasmatodea as sister groups. SN - 1879-0038 UR - https://www.unboundmedicine.com/medline/citation/24412485/Complete_mitochondrial_genome_of_the_stonefly_Cryptoperla_stilifera_Sivec__Plecoptera:_Peltoperlidae__and_the_phylogeny_of_Polyneopteran_insects_ DB - PRIME DP - Unbound Medicine ER -