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Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.).
Theor Appl Genet. 2015 Jun; 128(6):1083-101.TA

Abstract

KEY MESSAGE

Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions. Stripe rust (Puccinia striiformis F. sp. tritici; also known as yellow rust) is a globally devastating disease of wheat (Triticum aestivum L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to Yr17 and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.

Authors+Show Affiliations

Department of Crop and Soil Sciences, Washington State University, Pullman, WA, 99164-6420, USA, yukiko.naruoka@wsu.edu.No affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.

Language

eng

PubMed ID

25754424

Citation

Naruoka, Y, et al. "Genome-wide Association Mapping for Stripe Rust (Puccinia Striiformis F. Sp. Tritici) in US Pacific Northwest Winter Wheat (Triticum Aestivum L.)." TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik, vol. 128, no. 6, 2015, pp. 1083-101.
Naruoka Y, Garland-Campbell KA, Carter AH. Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.). Theor Appl Genet. 2015;128(6):1083-101.
Naruoka, Y., Garland-Campbell, K. A., & Carter, A. H. (2015). Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.). TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik, 128(6), 1083-101. https://doi.org/10.1007/s00122-015-2492-2
Naruoka Y, Garland-Campbell KA, Carter AH. Genome-wide Association Mapping for Stripe Rust (Puccinia Striiformis F. Sp. Tritici) in US Pacific Northwest Winter Wheat (Triticum Aestivum L.). Theor Appl Genet. 2015;128(6):1083-101. PubMed PMID: 25754424.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.). AU - Naruoka,Y, AU - Garland-Campbell,K A, AU - Carter,A H, Y1 - 2015/03/10/ PY - 2014/09/25/received PY - 2015/02/27/accepted PY - 2015/3/11/entrez PY - 2015/3/11/pubmed PY - 2015/8/11/medline SP - 1083 EP - 101 JF - TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik JO - Theor Appl Genet VL - 128 IS - 6 N2 - KEY MESSAGE: Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions. Stripe rust (Puccinia striiformis F. sp. tritici; also known as yellow rust) is a globally devastating disease of wheat (Triticum aestivum L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to Yr17 and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars. SN - 1432-2242 UR - https://www.unboundmedicine.com/medline/citation/25754424/Genome_wide_association_mapping_for_stripe_rust__Puccinia_striiformis_F__sp__tritici__in_US_Pacific_Northwest_winter_wheat__Triticum_aestivum_L___ L2 - https://dx.doi.org/10.1007/s00122-015-2492-2 DB - PRIME DP - Unbound Medicine ER -