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Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.).
Theor Appl Genet. 2015 Jun; 128(6):1103-15.TA

Abstract

KEY MESSAGE

SSR-based QTL mapping provides useful information for map-based cloning of major QTLs and can be used to improve the agronomic and quality traits in cultivated peanut by marker-assisted selection. Cultivated peanut (Arachis hypogaea L.) is an allotetraploid species (AABB, 2n = 4× = 40), valued for its edible oil and digestible protein. Linkage mapping has been successfully conducted for most crops, and it has been applied to detect the quantitative trait loci (QTLs) of biotic and abiotic traits in peanut. However, the genetic basis of agronomic and quality-related traits remains unclear. In this study, high levels of phenotypic variation, broad-sense heritability and significant correlations were observed for agronomic and quality-related traits in an F 2:3 population. A genetic linkage map was constructed for cultivated peanut containing 470 simple sequence repeat (SSR) loci, with a total length of 1877.3 cM and average distance of 4.0 cM between flanking markers. For 10 agronomic traits, 24 QTLs were identified and each QTL explained 1.69-18.70 % of the phenotypic variance. For 8 quality-related traits, 12 QTLs were identified that explained 1.72-20.20 % of the phenotypic variance. Several QTLs for multiple traits were overlapped, reflecting the phenotypic correlation between these traits. The majority of QTLs exhibited obvious dominance or over-dominance effects on agronomic and quality traits, highlighting the importance of heterosis for breeding. A comparative analysis revealed genomic duplication and arrangement of peanut genome, which aids the assembly of scaffolds in genomic sequencing of Arachis hypogaea. Our QTL analysis results enabled us to clearly understand the genetic base of agronomic and quality traits in cultivated peanut, further accelerating the progress of map-based cloning of major QTLs and marker-assisted selection in future breeding.

Authors+Show Affiliations

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China.No affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info availableNo affiliation info available

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

25805315

Citation

Huang, Li, et al. "Quantitative Trait Locus Analysis of Agronomic and Quality-related Traits in Cultivated Peanut (Arachis Hypogaea L.)." TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik, vol. 128, no. 6, 2015, pp. 1103-15.
Huang L, He H, Chen W, et al. Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.). Theor Appl Genet. 2015;128(6):1103-15.
Huang, L., He, H., Chen, W., Ren, X., Chen, Y., Zhou, X., Xia, Y., Wang, X., Jiang, X., Liao, B., & Jiang, H. (2015). Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.). TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik, 128(6), 1103-15. https://doi.org/10.1007/s00122-015-2493-1
Huang L, et al. Quantitative Trait Locus Analysis of Agronomic and Quality-related Traits in Cultivated Peanut (Arachis Hypogaea L.). Theor Appl Genet. 2015;128(6):1103-15. PubMed PMID: 25805315.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.). AU - Huang,Li, AU - He,Haiyan, AU - Chen,Weigang, AU - Ren,Xiaoping, AU - Chen,Yuning, AU - Zhou,Xiaojing, AU - Xia,Youlin, AU - Wang,Xiaolin, AU - Jiang,Xiangguo, AU - Liao,Boshou, AU - Jiang,Huifang, Y1 - 2015/03/25/ PY - 2014/07/06/received PY - 2015/03/07/accepted PY - 2015/3/26/entrez PY - 2015/3/26/pubmed PY - 2015/8/11/medline SP - 1103 EP - 15 JF - TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik JO - Theor Appl Genet VL - 128 IS - 6 N2 - KEY MESSAGE: SSR-based QTL mapping provides useful information for map-based cloning of major QTLs and can be used to improve the agronomic and quality traits in cultivated peanut by marker-assisted selection. Cultivated peanut (Arachis hypogaea L.) is an allotetraploid species (AABB, 2n = 4× = 40), valued for its edible oil and digestible protein. Linkage mapping has been successfully conducted for most crops, and it has been applied to detect the quantitative trait loci (QTLs) of biotic and abiotic traits in peanut. However, the genetic basis of agronomic and quality-related traits remains unclear. In this study, high levels of phenotypic variation, broad-sense heritability and significant correlations were observed for agronomic and quality-related traits in an F 2:3 population. A genetic linkage map was constructed for cultivated peanut containing 470 simple sequence repeat (SSR) loci, with a total length of 1877.3 cM and average distance of 4.0 cM between flanking markers. For 10 agronomic traits, 24 QTLs were identified and each QTL explained 1.69-18.70 % of the phenotypic variance. For 8 quality-related traits, 12 QTLs were identified that explained 1.72-20.20 % of the phenotypic variance. Several QTLs for multiple traits were overlapped, reflecting the phenotypic correlation between these traits. The majority of QTLs exhibited obvious dominance or over-dominance effects on agronomic and quality traits, highlighting the importance of heterosis for breeding. A comparative analysis revealed genomic duplication and arrangement of peanut genome, which aids the assembly of scaffolds in genomic sequencing of Arachis hypogaea. Our QTL analysis results enabled us to clearly understand the genetic base of agronomic and quality traits in cultivated peanut, further accelerating the progress of map-based cloning of major QTLs and marker-assisted selection in future breeding. SN - 1432-2242 UR - https://www.unboundmedicine.com/medline/citation/25805315/Quantitative_trait_locus_analysis_of_agronomic_and_quality_related_traits_in_cultivated_peanut__Arachis_hypogaea_L___ DB - PRIME DP - Unbound Medicine ER -