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Towards an integrated phylogenetic classification of the Tremellomycetes.
Stud Mycol. 2015 Jun; 81:85-147.SM

Abstract

Families and genera assigned to Tremellomycetes have been mainly circumscribed by morphology and for the yeasts also by biochemical and physiological characteristics. This phenotype-based classification is largely in conflict with molecular phylogenetic analyses. Here a phylogenetic classification framework for the Tremellomycetes is proposed based on the results of phylogenetic analyses from a seven-genes dataset covering the majority of tremellomycetous yeasts and closely related filamentous taxa. Circumscriptions of the taxonomic units at the order, family and genus levels recognised were quantitatively assessed using the phylogenetic rank boundary optimisation (PRBO) and modified general mixed Yule coalescent (GMYC) tests. In addition, a comprehensive phylogenetic analysis on an expanded LSU rRNA (D1/D2 domains) gene sequence dataset covering as many as available teleomorphic and filamentous taxa within Tremellomycetes was performed to investigate the relationships between yeasts and filamentous taxa and to examine the stability of undersampled clades. Based on the results inferred from molecular data and morphological and physiochemical features, we propose an updated classification for the Tremellomycetes. We accept five orders, 17 families and 54 genera, including seven new families and 18 new genera. In addition, seven families and 17 genera are emended and one new species name and 185 new combinations are proposed. We propose to use the term pro tempore or pro tem. in abbreviation to indicate the species names that are temporarily maintained.

Authors+Show Affiliations

State Key Laboratory for Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands.State Key Laboratory for Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands.Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig 38124, Germany.CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands.Faculty of Soil Science, Lomonosov Moscow State University, Moscow 119991, Russia.Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA.Departamento de Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, E-28933 Móstoles, Spain.Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-10405 Stockholm, Sweden.Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig 38124, Germany.State Key Laboratory for Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands; Shanghai Key Laboratory of Molecular Medical Mycology, Changzheng Hospital, Second Military Medical University, Shanghai, PR China.State Key Laboratory for Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

26955199

Citation

Liu, X-Z, et al. "Towards an Integrated Phylogenetic Classification of the Tremellomycetes." Studies in Mycology, vol. 81, 2015, pp. 85-147.
Liu XZ, Wang QM, Göker M, et al. Towards an integrated phylogenetic classification of the Tremellomycetes. Studies in mycology. 2015;81:85-147.
Liu, X. Z., Wang, Q. M., Göker, M., Groenewald, M., Kachalkin, A. V., Lumbsch, H. T., Millanes, A. M., Wedin, M., Yurkov, A. M., Boekhout, T., & Bai, F. Y. (2015). Towards an integrated phylogenetic classification of the Tremellomycetes. Studies in Mycology, 81, 85-147. https://doi.org/10.1016/j.simyco.2015.12.001
Liu XZ, et al. Towards an Integrated Phylogenetic Classification of the Tremellomycetes. Studies in mycology. 2015;81:85-147. PubMed PMID: 26955199.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Towards an integrated phylogenetic classification of the Tremellomycetes. AU - Liu,X-Z, AU - Wang,Q-M, AU - Göker,M, AU - Groenewald,M, AU - Kachalkin,A V, AU - Lumbsch,H T, AU - Millanes,A M, AU - Wedin,M, AU - Yurkov,A M, AU - Boekhout,T, AU - Bai,F-Y, Y1 - 2016/01/08/ PY - 2016/3/9/entrez PY - 2016/3/10/pubmed PY - 2016/3/10/medline KW - A. cacaoliposimilis (J.L. Zhou, S.O. Suh & Gujjari) Kachalkin, A.M. Yurkov & Boekhout KW - A. dehoogii (Middelhoven, Scorzetti & Fell) A.M. Yurkov & Boekhout KW - A. domesticum (Sugita, A. Nishikawa & Shinoda) A.M. Yurkov & Boekhout KW - A. dulcitum (Berkhout) A.M. Yurkov & Boekhout KW - A. gamsii (Middelhoven, Scorzetti, Sigler & Fell) A.M. Yurkov & Boekhout KW - A. gracile (Weigmann & A. Wolff) A.M. Yurkov & Boekhout KW - A. laibachii (Windisch) A.M. Yurkov & Boekhout KW - A. lignicola (Diddens) A.M. Yurkov & Boekhout KW - A. loubieri (Morenz) A.M. Yurkov & Boekhout KW - A. montevideense (L.A. Queiroz) A.M. Yurkov & Boekhout KW - A. mycotoxinivorans (O. Molnár, Schatzm. & Prillinger) A.M. Yurkov & Boekhout KW - A. scarabaeorum (Middelhoven, Scorzetti & Fell) A.M. Yurkov & Boekhout KW - A. siamense (Nakase, Jindam., Sugita & H. Kawas.) Kachalkin, A.M. Yurkov & Boekhout KW - A. sporotrichoides (van Oorschot) A.M. Yurkov & Boekhout KW - A. vadense (Middelhoven, Scorzetti & Fell) A.M. Yurkov & Boekhout KW - A. veenhuisii (Middelhoven, Scorzetti & Fell) A.M. Yurkov & Boekhout KW - A. wieringae (Middelhoven) A.M. Yurkov & Boekhout KW - A. xylopini (S.O. Suh, Lee, Gujjari & Zhou) Kachalkin, A.M. Yurkov & Boekhout KW - Apiotrichumbrassicae (Nakase) A.M. Yurkov & Boekhout KW - Bandonia A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bandoniamarina (van Uden & Zobell) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. foliicola (Q.M. Wang, F.Y. Bai, Boekhout & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. hainanense (Q.M. Wang, F.Y. Bai, Boekhout & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. panici (Fungsin, M. Takash. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. pseudovariabile (F.Y. Bai, M. Takash. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. sanyaense (Q.M. Wang, F.Y. Bai, Boekhout & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. setariae (Nakase, Tsuzuki, F.L. Lee & M. Takash.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. siamense (Fungsin, M. Takash. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. variabile (Nakase & M. Suzuki) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bu. wuzhishanense (Q.M. Wang, F.Y. Bai, Boekhout & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bulleraceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bulleribasidiaceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Bulleribasidiumbegoniae (Nakase, Tsuzuki, F.L. Lee & M. Takash.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Carc. polyporina (D.A. Reid) A.M. Yurkov KW - Carcinomycesarundinariae (Fungsin, M. Takash. & Nakase) A.M. Yurkov KW - Carlosrosaea A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Carlosrosaeavrieseae (Landell, Brandão, Safar, Gomes, Félix, Santos, Pagani, Ramos, Broetto, Mott, Valente & Rosa) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cr. luteus (Roberts) Boekhout, Liu, Bai & M. Groenew. KW - Cryptococcusdepauperatus (Petch) Boekhout, Liu, Bai & M. Groenew. KW - Cu. curvatus (Diddens & Lodder) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. cutaneum (de Beurmann, Gougerot & Vaucher) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. cyanovorans (Motaung, Albertyn, J.L.F. Kock et Pohl) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. daszewskae (Takash., Sugita, Shinoda & Nakase) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. debeurmannianum (Sugita, Takash., Nakase & Shinoda) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. dermatis (Sugita, Takash., Nakase, Ichikawa, Ikeda & Shinoda) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. guehoae (Middelhoven, Scorzettii & Fell) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. haglerorum (Middelhoven, Á. Fonseca, S.C. Carreiro, Pagnocca & O.C. Bueno) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. jirovecii (Frágner) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. moniliiforme (Weigmann & A. Wolff) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. mucoides (E. Guého & M.T. Smith) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. oleaginosus (J.J. Zhou, S.O. Suh & Gujjari) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. smithiae (Middelhoven, Scorzetti, Sugita & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cu. terricola (Sugita, M. Takash. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cutaneotrichosporon X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Cutaneotrichosporonarboriformis (Sugita, M. Takash., Sano, Nishim., Kinebuchi, S. Yamag. & Osanai) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Dimennazyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Dimennazyma cistialbidi (Á. Fonseca, J. Inácio & Spenc.-Mart.) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Effuseotrichosporon A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Effuseotrichosporon vanderwaltii (Motaung, Albertyn, Kock, C.F. Lee, S.O. Suh, M. Blackwell & C.H. Pohl) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fil. magnum (Lodder & Kreger-van Rij) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fil. oeirense (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fil. stepposum (Golubev & J.P. Samp.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fil. wieringae (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Filobasidium chernovii (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fon. mujuensis (K.S. Shin & Y.H. Park) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fon. tronadorensis (V. De Garcia, Zalar, Brizzio, Gunde-Cim. & van Brook) A.M. Yurkov KW - Fonsecazyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Fonsecazyma betulae (K. Sylvester, Q.M. Wang, C. T. Hittinger) A.M. Yurkov, A.V. Kachalkin & Boekhout KW - Gelidatrema A.M. Yurkov, X.Z. Liu, F.Y. Bai KW - Gelidatrema spencermartinsiae (Garcia, Brizzio, Boekhout, Theelen, Libkind & van Broock) A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gen. armeniaca (Á. Fonseca & J. Inácio) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gen. bromeliarum (Landell & P. Valente) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gen. tibetensis (F.Y. Bai & Q.M. Wang) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Genolevuria X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Genolevuria amylolytica (Á. Fonseca, J. Inácio & Spenc.-Mart.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gof. agrionensis (Russo, Libkind, Samp. & van Broock) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gof. gastrica (Reiersöl & di Menna) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gof. gilvescens (Chernov & Babeva) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gof. iberica (Gadanho & J.P. Samp.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Gof. metallitolerans (Gadanho & J.P. Samp.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Goffeauzyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Goffeauzyma aciditolerans (Gadanho & J.P. Samp.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Haglerozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Haglerozymachiarellii (Pagnocca, Legaspe, Rodrigues & Ruivo) A. M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Het. bachmannii (Diederich & M.S. Christ.) Millanes & Wedin KW - Het. physciacearum (Diederich) Millanes & Wedin KW - Heterocephalacriaarrabidensis (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Itersoniliapannonica (Niwata, Takash., Tornai-Lehoczki, T. Deák & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Jelly fungi KW - Ko. distylii (Hamam., Kuroy. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Ko. fuzhouensis (J.Z. Yue) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Ko. lichenicola (Prillinger, G. Kraep. & Lopandic) X.Z. Liu, F.Y. Bai KW - Ko. mexicana (Lopandic, O. Molnár & Prillinger) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Ko. ogasawarensis (Hamam., Kuroy. & Nakase) X.Z. Liu, F.Y. Bai, Groenew. & Boekhout KW - Ko. sichuanensis (Prillinger, G. Kraep. & Lopandic) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kockovaellachinensis (Prillinger, G. Kraep. & Lopandic) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kockovaellaprillingeri (Prillinger, G. Kraep. & Lopandic) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kr. tahquamenonensis (Wang, Hulfachor, Sylvester and Hittinger) A.M. Yurkov KW - Krasilnikovozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Krasilnikovozymahuempii (C. Ramírez & A. E. González) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kw. dejecticola (Thanh, Hai & Lachance) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kw. dendrophila (Van der Walt & D.B. Scott) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kw. pini (Golubev & Pfeiffer) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kw. shivajii (S.R. Ravella, S.A. James, C.J. Bond, I.N. Roberts, K. Cross, Retter & P.J. Hobbs) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Kwoniellabestiolae (Thanh, Hai & Lachance) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - M. Groenew. & Boekhout KW - M. cryoconiti (Margesin & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - M. niccombsii (Thomas-Hall) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Morphology KW - Mrakiaaquatica (E.B.G. Jones & Slooff) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Mrakiaceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Multigene phylogeny KW - Naem. microspora (Lloyd) Millanes & Wedin KW - Naemateliaaurantialba (Bandoni & M. Zang) Millanes & Wedin KW - Naemateliaceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. albida (Saito) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. albidosimilis (Vishniac & Kurtzman) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. antarctica (Vishniac & Kurtzman) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. bhutanensis (Goto & Sugiy.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. cerealis (Passoth, A.-C. Andersson, Olstorpe, Theelen, Boekhout & Schnürer) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. diffluens (Zach) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. friedmannii (Vishniac) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. liquefaciens (Saito & M. Ota) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. onofrii (Turchetti, Selbmann & Zucconi) A.M. Yurkov KW - Nag. randhawae (Z.U. Khan, S.O. Suh. Ahmad, F. Hagen, Fell, Kowshik, Chandy & Boekhout) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. uzbekistanensis (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nag. vaughanmartiniae (Turchetti, Blanchette & Arenz) A.M. Yurkov KW - Nag. vishniacii (Vishniac & Hempfling) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Naganishiaadeliensis (Scorzetti, I. Petrescu, Yarrow & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Niel. melastomae (Nakase, Tsuzuki, F.L. Lee & M. Takash.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nielozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Nielozymaformosana (Nakase, Tsuzuki, F.L. Lee & M. Takash.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - P. mycophaga (G.W. Martin) Millanes & Wedin KW - Pap. aspenensis (K. Ferreira-Paim, T.B. Ferreira, L. Andrade-Silva, D.J. Mora, D.J. Springer, J. Heitman, F.M. Fonseca, D. Matos, M.S.C. Melhem & M.L. Silva-Vergara) X.Z. Liu, F.Y. Bai, A.M. Yurkov & Boekhout KW - Pap. aurea (Saito) M. Takash., Sugita, Shinoda & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. baii (A.M. Yurkov, M.A. Guerreiro & Á. Fonseca) A.M. Yurkov KW - Pap. flavescens (Saito) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. fonsecae (V. de García, Zalar, Braizzio, Gunde-Cim. & van Brollck) A.M. Yurkov KW - Pap. frias (V. de García, Zalar, Braizzio, Gunde-Cim. & van Brollck) A.M. Yurkov KW - Pap. fuscus (J.P. Samp., J. Inácio, Fonseca & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. hoabinhensis (D.T. Luong, M. Takash., Ty. Dung & Nakase) A.M. Yurkov KW - Pap. japonica (J.P. Samp., Fonseca & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. laurentii (Kuff.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. mangalensis (Fell, Statzell & Scorzett) A.M. Yurkov KW - Pap. nemorosus (Golubev, Gadanho, J.P. Samp. & N.W. Golubev) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. perniciosus (Golubev, Gadanho, J.P. Samp. & N.W. Golubev) X.Z. Liu, F.Y. Bai KW - Pap. pseudoalba (Nakase & M. Suzuki) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. rajasthanensis (Saluja & G.S. Prasad) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. ruineniae (A.M. Yurkov, M.A. Guerreiro & Á. Fonseca) A.M. Yurkov KW - Pap. taeanensis (K.S. Shin & Y.H. Park) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. terrestris (Crestani, Landell, Faganello, Vainstein, Vishniac & P. Valente) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pap. wisconsinensis (Crestani, Landell, Faganello, Vainstein, Vishniac & P. Valente) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Papiliotremaanemochoreius (C.H. Pohl, Kock, P.W.J. van Wyk & Albertyn) F.Y. Bai, M. Groenew. & Boekhout KW - Ph. mycetophiloides (Kobayasi) Millanes & Wedin KW - Ph. neofoliacea (Chee J. Chen) Millanes & Wedin KW - Ph. simplex (H.S. Jacks. & G.W. Martin) Millanes & Wedin KW - Ph. skinneri (Phaff & Carmo Souza) A.M. Yurkov & Boekhout KW - Phaeotremellaceae A.M. Yurkov & Boekhout KW - Phaeotremellafagi (Middelhoven & Scorzetti) A.M. Yurkov & Boekhout KW - Pis. cylindrica (Á. Fonseca, Scorzetti & Fell) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pis. fildesensis (T. Zhang & L.-Y. Yu) A.M. Yurkov KW - Pis. filicatus (Golubev & J.P. Samp.) Kachalkin KW - Pis. silvicola (Golubev & J.P. Samp.) X.Z. Liu, F.Y. Bai, Groenew. & Boekhout KW - Pis. sorana (Hauerslev) A.M. Yurkov KW - Pis. taiwanensis (Nakase, Tsuzuki & M. Takash.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Piskurozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Piskurozymacapsuligena (Fell, Statzell, I.L. Hunter & Phaff) A.M. Yurkov KW - Piskurozymaceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Ps. lacticolor (Satoh & Makimura) A.M. Yurkov KW - Ps. moriformis (Berk.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Ps. nivalis (Chee J. Chen) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Pseudotremella X.Z. Liu, F.Y. Bai, A.M. Yurkov, M. Groenew. & Boekhout KW - Pseudotremellaallantoinivorans (Middelhoven) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - R. complexa (Landell, Pagnocca, Sette, Passarini, Garcia, Ribeiro, Lee, Brandao, Rosa & Valente) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. fermentans (Lee) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. glucofermentans (S.O. Suh & Blackwell) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. nanyangensis (F.L. Hui & Q.H. Niu) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. noutii (Boekhout, Fell, Scorzett & Theelen) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. tunnelae (Boekhout, Fell, Scorzetti & Theelen) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - R. visegradensis (Peter & Dlauchy) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - Ranks KW - Rhynchogastremaaquatica (Brandao, Valente, Pimenta & Rosa) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - Sait. ninhbinhensis (Luong, Takash., Dung & Nakase) A.M. Yurkov KW - Sait. paraflava (Golubev & J.P. Samp.) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Sait. podzolica (Babeva & Reshetova) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Saitozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Saitozymaflava (Saito) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Sol. fuscescens (Golubev) A.M. Yurkov KW - Sol. keelungensis (C.F. Chang & S.M. Liu) A.M. Yurkov KW - Sol. phenolicus (Á. Fonseca, Scorzetti & Fell) A.M. Yurkov KW - Sol. terreus (Di Menna) A.M. Yurkov KW - Sol. terricola (T.A. Pedersen) A.M. Yurkov KW - Solicoccozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Solicoccozymaaeria (Saito) A.M. Yurkov KW - Sugitazyma A.M. Yurkov, X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Sugitazymamiyagiana (Nakase, Itoh, Takem. & Bandoni) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Tausoniapullulans (Lindner) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Taxonomy KW - Tremellayokohamensis (Alshahni, Satoh & Makimura) A.M. Yurkov KW - Tremellomycetes KW - Trimorphomycessakaeraticus (Fungsin, M. Takash. & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew., Boekhout & A.M. Yurkov KW - Trimorphomycetaceae X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Van. meifongana (C.F. Lee) Kachalkin, A.M. Yurkov & Boekhout KW - Van. nantouana (C.F. Lee) Kachalkin, A.M. Yurkov & Boekhout KW - Van. thermophila (Vogelmann, Chaves & Hertel) Kachalkin, A.M. Yurkov & Boekhout KW - Vanrijafragicola (M. Takash., Sugita, Shinoda & Nakase) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. dimennae (Fell & Phaff) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. foliicola (Q.M. Wang & F.Y. Bai) A.M. Yurkov KW - Vis. globispora (B.N. Johri & Bandoni) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. heimaeyensis (Vishniac) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. nebularis (Vishniac) A.M. Yurkov KW - Vis. peneaus (Phaff, Mrak & O.B. Williams) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. psychrotolerans (V. de García, Zalar, Brizzio, Gunde-Cim. & van Broock) A.M. Yurkov KW - Vis. taibaiensis (Q.M. Wang & F.Y. Bai) A.M. Yurkov KW - Vis. tephrensis (Vishniac) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vis. victoriae (M.J. Montes, Belloch, Galiana, M.D. García, C. Andrés, S. Ferrer, Torr.-Rodr. & J. Guinea) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vishniacozyma X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Vishniacozymacarnescens (Verona & Luchetti) X.Z. Liu, F.Y. Bai, M. Groenew. & Boekhout KW - Yeasts SP - 85 EP - 147 JF - Studies in mycology VL - 81 N2 - Families and genera assigned to Tremellomycetes have been mainly circumscribed by morphology and for the yeasts also by biochemical and physiological characteristics. This phenotype-based classification is largely in conflict with molecular phylogenetic analyses. Here a phylogenetic classification framework for the Tremellomycetes is proposed based on the results of phylogenetic analyses from a seven-genes dataset covering the majority of tremellomycetous yeasts and closely related filamentous taxa. Circumscriptions of the taxonomic units at the order, family and genus levels recognised were quantitatively assessed using the phylogenetic rank boundary optimisation (PRBO) and modified general mixed Yule coalescent (GMYC) tests. In addition, a comprehensive phylogenetic analysis on an expanded LSU rRNA (D1/D2 domains) gene sequence dataset covering as many as available teleomorphic and filamentous taxa within Tremellomycetes was performed to investigate the relationships between yeasts and filamentous taxa and to examine the stability of undersampled clades. Based on the results inferred from molecular data and morphological and physiochemical features, we propose an updated classification for the Tremellomycetes. We accept five orders, 17 families and 54 genera, including seven new families and 18 new genera. In addition, seven families and 17 genera are emended and one new species name and 185 new combinations are proposed. We propose to use the term pro tempore or pro tem. in abbreviation to indicate the species names that are temporarily maintained. SN - 0166-0616 UR - https://www.unboundmedicine.com/medline/citation/26955199/Towards_an_integrated_phylogenetic_classification_of_the_Tremellomycetes_ L2 - https://linkinghub.elsevier.com/retrieve/pii/S0166-0616(15)00027-5 DB - PRIME DP - Unbound Medicine ER -
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