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PPARGC1B gene is associated with Kashin-Beck disease in Han Chinese.
Funct Integr Genomics. 2016 Jul; 16(4):459-63.FI

Abstract

Kashin-Beck disease (KBD) is a chronic osteochondropathy. The genetic basis of KBD remains elusive now. To investigate the relationship between PPARGC1B gene polymorphism and KBD, we conducted a two-stage association study using 2743 unrelated Han Chinese subjects. In the first stage, three SNPs rs1078324, rs4705372, and rs11743128 of PPARGC1B gene were genotyped in 559 KBD patients and 467 health controls using Sequenom MassARRAY platform. In the second stage, the association analysis results of PPARGC1B with KBD were replicated using an independent sample of 1717 subjects. SNP association analysis was conducted by PLINK software. Genotype imputation was conducted by IMPUTE 2.0 against the reference panel of the 1000 genome project. Bonferroni multiple testing correction was performed. We observed a significant association signal at rs4705372 (P = 0.0160) and a suggestive association signal at rs11743128 (P = 0.0290). Further replication study confirmed the association signals of rs4705372 (P = 0.0026) and rs11743128 (P = 0.0387) in the independent validation sample. Our study results suggest that PPARGC1B is a novel susceptibility gene of KBD.

Authors+Show Affiliations

Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China.Department of Nephrology and Traditional Chinese Medicine, The People's Liberating Army 451 Hospital, Xi'an, People's Republic of China.Key Laboratory of Biomedical Information Engineering of Ministry of Education, and Institute of Molecular Genetics, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, People's Republic of China.Key Laboratory of Biomedical Information Engineering of Ministry of Education, and Institute of Molecular Genetics, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, People's Republic of China.Department of Biostatistics and Bioinformatics, Tulane University School of Public Health and Tropical Medicine, New Orleans, LA, USA. Center for Bioinformatics and Genomics, Tulane University, New Orleans, LA, USA.Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha, People's Republic of China.Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha, People's Republic of China.Department of Biostatistics and Bioinformatics, Tulane University School of Public Health and Tropical Medicine, New Orleans, LA, USA. Center for Bioinformatics and Genomics, Tulane University, New Orleans, LA, USA.Department of Biostatistics and Bioinformatics, Tulane University School of Public Health and Tropical Medicine, New Orleans, LA, USA. Center for Bioinformatics and Genomics, Tulane University, New Orleans, LA, USA.Key Laboratory of Trace Elements and Endemic Diseases of National Health and Family Planning Commission, School of Public Health, Health Science Center, Xi'an Jiaotong University, Xi'an, People's Republic of China. fzhxjtu@mail.xjtu.edu.cn.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

27108113

Citation

Wen, Yan, et al. "PPARGC1B Gene Is Associated With Kashin-Beck Disease in Han Chinese." Functional & Integrative Genomics, vol. 16, no. 4, 2016, pp. 459-63.
Wen Y, Hao J, Xiao X, et al. PPARGC1B gene is associated with Kashin-Beck disease in Han Chinese. Funct Integr Genomics. 2016;16(4):459-63.
Wen, Y., Hao, J., Xiao, X., Wang, W., Guo, X., Lin, W., Yang, T., Liu, X., Shen, H., Tan, L., Chen, X., Tian, Q., Deng, H. W., & Zhang, F. (2016). PPARGC1B gene is associated with Kashin-Beck disease in Han Chinese. Functional & Integrative Genomics, 16(4), 459-63. https://doi.org/10.1007/s10142-016-0496-x
Wen Y, et al. PPARGC1B Gene Is Associated With Kashin-Beck Disease in Han Chinese. Funct Integr Genomics. 2016;16(4):459-63. PubMed PMID: 27108113.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - PPARGC1B gene is associated with Kashin-Beck disease in Han Chinese. AU - Wen,Yan, AU - Hao,Jingcan, AU - Xiao,Xiao, AU - Wang,Wenyu, AU - Guo,Xiong, AU - Lin,Weimin, AU - Yang,Tielin, AU - Liu,Xiaogang, AU - Shen,Hui, AU - Tan,Lijun, AU - Chen,Xiangding, AU - Tian,Qing, AU - Deng,Hong-Wen, AU - Zhang,Feng, Y1 - 2016/04/23/ PY - 2015/11/09/received PY - 2016/04/18/accepted PY - 2016/04/08/revised PY - 2016/4/25/entrez PY - 2016/4/25/pubmed PY - 2017/2/9/medline KW - Association analysis KW - Imputation study KW - Kashin-Beck disease KW - PPARGC1B SP - 459 EP - 63 JF - Functional & integrative genomics JO - Funct. Integr. Genomics VL - 16 IS - 4 N2 - Kashin-Beck disease (KBD) is a chronic osteochondropathy. The genetic basis of KBD remains elusive now. To investigate the relationship between PPARGC1B gene polymorphism and KBD, we conducted a two-stage association study using 2743 unrelated Han Chinese subjects. In the first stage, three SNPs rs1078324, rs4705372, and rs11743128 of PPARGC1B gene were genotyped in 559 KBD patients and 467 health controls using Sequenom MassARRAY platform. In the second stage, the association analysis results of PPARGC1B with KBD were replicated using an independent sample of 1717 subjects. SNP association analysis was conducted by PLINK software. Genotype imputation was conducted by IMPUTE 2.0 against the reference panel of the 1000 genome project. Bonferroni multiple testing correction was performed. We observed a significant association signal at rs4705372 (P = 0.0160) and a suggestive association signal at rs11743128 (P = 0.0290). Further replication study confirmed the association signals of rs4705372 (P = 0.0026) and rs11743128 (P = 0.0387) in the independent validation sample. Our study results suggest that PPARGC1B is a novel susceptibility gene of KBD. SN - 1438-7948 UR - https://www.unboundmedicine.com/medline/citation/27108113/PPARGC1B_gene_is_associated_with_Kashin_Beck_disease_in_Han_Chinese_ L2 - https://dx.doi.org/10.1007/s10142-016-0496-x DB - PRIME DP - Unbound Medicine ER -