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Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae).
Mol Phylogenet Evol. 2017 04; 109:226-239.MP

Abstract

Statistical historical biogeographic methods rely on models that represent various biogeographic processes. Until recently model selection in this domain was not widely used, and the impact of differential model selection on inferring biogeographic scenarios was not well understood. Focusing on Neotropical weevils in the Exophthalmus genus complex (EGC) (Insecta: Curculionidae: Entiminae), we compare three commonly used biogeographic models - DIVA (Dispersal-Vicariance Analysis), DEC (Dispersal-Extinction-Cladogenesis) and BayArea (Bayesian Analysis of Biogeography), and examine the impact of modeling founder-event jump dispersal on historical biogeographic reconstructions. We also investigate the biogeographic events that have shaped patterns of distribution, diversification, and endemism in this weevil lineage. We sample representatives of 65 species of the EGC and 26 outgroup terminals from the Neotropics, including Caribbean islands and the mainland. We reconstruct a molecular phylogeny based on six genes and apply molecular dating using a relaxed clock with three fossil calibration points. Historical biogeographic estimations and alternative biogeographic models are computed and compared with the R package BioGeoBEARS. Model selection strongly favors biogeographic models that include founder-event jump dispersal. Without modeling jump dispersal, estimations based on the three biogeographic models are dramatically different, especially for early-diverging nodes. When jump dispersal is included, the three biogeographic models perform similarly. Accordingly, we show that the Neotropical mainland was colonized by Caribbean species in the early Miocene, and that in situ diversification accounts for a majority (∼75%) of the biogeographic events in the EGC. Our study highlights the need to assess wide-ranging historical biogeographic processes - including founder-event jump dispersal - for best-fitting statistical Caribbean biogeographic reconstructions. Moreover, colonization of the Neotropical mainland from the Caribbean reinforces the notion that islands can be an important source of continental diversity.

Authors+Show Affiliations

School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA. Electronic address: guanyang.zhang@asu.edu.School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA; Undergraduate Research Program (SOLUR), School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA. Electronic address: basharat.usmaan@gmail.com.National Institute for Mathematical and Biological Synthesis, 1122 Volunteer Boulevard, Suite 106, University of Tennessee, Knoxville, TN 37996, USA. Electronic address: nickmatzke.ncse@gmail.com.School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA. Electronic address: nico.franz@asu.edu.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

28057552

Citation

Zhang, Guanyang, et al. "Model Selection in Statistical Historical Biogeography of Neotropical insects-The Exophthalmus Genus Complex (Curculionidae: Entiminae)." Molecular Phylogenetics and Evolution, vol. 109, 2017, pp. 226-239.
Zhang G, Basharat U, Matzke N, et al. Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae). Mol Phylogenet Evol. 2017;109:226-239.
Zhang, G., Basharat, U., Matzke, N., & Franz, N. M. (2017). Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae). Molecular Phylogenetics and Evolution, 109, 226-239. https://doi.org/10.1016/j.ympev.2016.12.039
Zhang G, et al. Model Selection in Statistical Historical Biogeography of Neotropical insects-The Exophthalmus Genus Complex (Curculionidae: Entiminae). Mol Phylogenet Evol. 2017;109:226-239. PubMed PMID: 28057552.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae). AU - Zhang,Guanyang, AU - Basharat,Usmaan, AU - Matzke,Nicholas, AU - Franz,Nico M, Y1 - 2017/01/03/ PY - 2016/05/14/received PY - 2016/11/27/revised PY - 2016/12/29/accepted PY - 2017/1/7/pubmed PY - 2017/9/30/medline PY - 2017/1/7/entrez KW - Caribbean biogeography KW - Dispersal KW - Molecular dating KW - Statistical biogeography KW - West Indies SP - 226 EP - 239 JF - Molecular phylogenetics and evolution JO - Mol Phylogenet Evol VL - 109 N2 - Statistical historical biogeographic methods rely on models that represent various biogeographic processes. Until recently model selection in this domain was not widely used, and the impact of differential model selection on inferring biogeographic scenarios was not well understood. Focusing on Neotropical weevils in the Exophthalmus genus complex (EGC) (Insecta: Curculionidae: Entiminae), we compare three commonly used biogeographic models - DIVA (Dispersal-Vicariance Analysis), DEC (Dispersal-Extinction-Cladogenesis) and BayArea (Bayesian Analysis of Biogeography), and examine the impact of modeling founder-event jump dispersal on historical biogeographic reconstructions. We also investigate the biogeographic events that have shaped patterns of distribution, diversification, and endemism in this weevil lineage. We sample representatives of 65 species of the EGC and 26 outgroup terminals from the Neotropics, including Caribbean islands and the mainland. We reconstruct a molecular phylogeny based on six genes and apply molecular dating using a relaxed clock with three fossil calibration points. Historical biogeographic estimations and alternative biogeographic models are computed and compared with the R package BioGeoBEARS. Model selection strongly favors biogeographic models that include founder-event jump dispersal. Without modeling jump dispersal, estimations based on the three biogeographic models are dramatically different, especially for early-diverging nodes. When jump dispersal is included, the three biogeographic models perform similarly. Accordingly, we show that the Neotropical mainland was colonized by Caribbean species in the early Miocene, and that in situ diversification accounts for a majority (∼75%) of the biogeographic events in the EGC. Our study highlights the need to assess wide-ranging historical biogeographic processes - including founder-event jump dispersal - for best-fitting statistical Caribbean biogeographic reconstructions. Moreover, colonization of the Neotropical mainland from the Caribbean reinforces the notion that islands can be an important source of continental diversity. SN - 1095-9513 UR - https://www.unboundmedicine.com/medline/citation/28057552/Model_selection_in_statistical_historical_biogeography_of_Neotropical_insects_The_Exophthalmus_genus_complex__Curculionidae:_Entiminae__ DB - PRIME DP - Unbound Medicine ER -