Tags

Type your tag names separated by a space and hit enter

Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj.
J Virol. 2017 06 01; 91(11)JV

Abstract

Outbreaks of respiratory virus infection at mass gatherings pose significant health risks to attendees, host communities, and ultimately the global population if they help facilitate viral emergence. However, little is known about the genetic diversity, evolution, and patterns of viral transmission during mass gatherings, particularly how much diversity is generated by in situ transmission compared to that imported from other locations. Here, we describe the genome-scale evolution of influenza A viruses sampled from the Hajj pilgrimages at Makkah during 2013 to 2015. Phylogenetic analysis revealed that the diversity of influenza viruses at the Hajj pilgrimages was shaped by multiple introduction events, comprising multiple cocirculating lineages in each year, including those that have circulated in the Middle East and those whose origins likely lie on different continents. At the scale of individual hosts, the majority of minor variants resulted from de novo mutation, with only limited evidence of minor variant transmission or minor variants circulating at subconsensus level despite the likely identification of multiple transmission clusters. Together, these data highlight the complexity of influenza virus infection at the Hajj pilgrimages, reflecting a mix of global genetic diversity drawn from multiple sources combined with local transmission, and reemphasize the need for vigilant surveillance at mass gatherings.IMPORTANCE Large population sizes and densities at mass gatherings such as the Hajj (Makkah, Saudi Arabia) can contribute to outbreaks of respiratory virus infection by providing local hot spots for transmission followed by spread to other localities. Using a genome-scale analysis, we show that the genetic diversity of influenza A viruses at the Hajj gatherings during 2013 to 2015 was largely shaped by the introduction of multiple viruses from diverse geographic regions, including the Middle East, with only little evidence of interhost virus transmission at the Hajj and seemingly limited spread of subconsensus mutational variants. The diversity of viruses at the Hajj pilgrimages highlights the potential for lineage cocirculation during mass gatherings, in turn fuelling segment reassortment and the emergence of novel variants, such that the continued surveillance of respiratory pathogens at mass gatherings should be a public health priority.

Authors+Show Affiliations

Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia.National Centre for Immunisation Research and Surveillance, The Children's Hospital at Westmead, and the Discipline of Paediatrics and Child Health, Sydney Medical School, University of Sydney, Sydney, New South Wales, Australia. Department of Family and Community Medicine, Faculty of Medicine in Rabigh, King Abdulaziz University, Jeddah, Saudi Arabia.National Centre for Immunisation Research and Surveillance, The Children's Hospital at Westmead, and the Discipline of Paediatrics and Child Health, Sydney Medical School, University of Sydney, Sydney, New South Wales, Australia. Research Center, King Abdullah Medical City, Makkah, Saudi Arabia.Institute for Clinical Pathology and Medical Research, NSW Health Pathology, Westmead Hospital and University of Sydney, Sydney, New South Wales, Australia.Institute for Clinical Pathology and Medical Research, NSW Health Pathology, Westmead Hospital and University of Sydney, Sydney, New South Wales, Australia.Institute for Clinical Pathology and Medical Research, NSW Health Pathology, Westmead Hospital and University of Sydney, Sydney, New South Wales, Australia.Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia. National Centre for Immunisation Research and Surveillance, The Children's Hospital at Westmead, and the Discipline of Paediatrics and Child Health, Sydney Medical School, University of Sydney, Sydney, New South Wales, Australia.Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia edward.holmes@sydney.edu.au harunor.rashid@health.nsw.gov.au.Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia edward.holmes@sydney.edu.au harunor.rashid@health.nsw.gov.au. National Centre for Immunisation Research and Surveillance, The Children's Hospital at Westmead, and the Discipline of Paediatrics and Child Health, Sydney Medical School, University of Sydney, Sydney, New South Wales, Australia.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

28331081

Citation

Cobbin, Joanna C A., et al. "Multiple Sources of Genetic Diversity of Influenza a Viruses During the Hajj." Journal of Virology, vol. 91, no. 11, 2017.
Cobbin JCA, Alfelali M, Barasheed O, et al. Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj. J Virol. 2017;91(11).
Cobbin, J. C. A., Alfelali, M., Barasheed, O., Taylor, J., Dwyer, D. E., Kok, J., Booy, R., Holmes, E. C., & Rashid, H. (2017). Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj. Journal of Virology, 91(11). https://doi.org/10.1128/JVI.00096-17
Cobbin JCA, et al. Multiple Sources of Genetic Diversity of Influenza a Viruses During the Hajj. J Virol. 2017 06 1;91(11) PubMed PMID: 28331081.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj. AU - Cobbin,Joanna C A, AU - Alfelali,Mohammad, AU - Barasheed,Osamah, AU - Taylor,Janette, AU - Dwyer,Dominic E, AU - Kok,Jen, AU - Booy,Robert, AU - Holmes,Edward C, AU - Rashid,Harunor, Y1 - 2017/05/12/ PY - 2017/01/18/received PY - 2017/03/11/accepted PY - 2017/3/24/pubmed PY - 2017/7/28/medline PY - 2017/3/24/entrez KW - Hajj KW - epidemiology KW - evolution KW - influenza KW - phylogeny KW - transmission JF - Journal of virology JO - J Virol VL - 91 IS - 11 N2 - Outbreaks of respiratory virus infection at mass gatherings pose significant health risks to attendees, host communities, and ultimately the global population if they help facilitate viral emergence. However, little is known about the genetic diversity, evolution, and patterns of viral transmission during mass gatherings, particularly how much diversity is generated by in situ transmission compared to that imported from other locations. Here, we describe the genome-scale evolution of influenza A viruses sampled from the Hajj pilgrimages at Makkah during 2013 to 2015. Phylogenetic analysis revealed that the diversity of influenza viruses at the Hajj pilgrimages was shaped by multiple introduction events, comprising multiple cocirculating lineages in each year, including those that have circulated in the Middle East and those whose origins likely lie on different continents. At the scale of individual hosts, the majority of minor variants resulted from de novo mutation, with only limited evidence of minor variant transmission or minor variants circulating at subconsensus level despite the likely identification of multiple transmission clusters. Together, these data highlight the complexity of influenza virus infection at the Hajj pilgrimages, reflecting a mix of global genetic diversity drawn from multiple sources combined with local transmission, and reemphasize the need for vigilant surveillance at mass gatherings.IMPORTANCE Large population sizes and densities at mass gatherings such as the Hajj (Makkah, Saudi Arabia) can contribute to outbreaks of respiratory virus infection by providing local hot spots for transmission followed by spread to other localities. Using a genome-scale analysis, we show that the genetic diversity of influenza A viruses at the Hajj gatherings during 2013 to 2015 was largely shaped by the introduction of multiple viruses from diverse geographic regions, including the Middle East, with only little evidence of interhost virus transmission at the Hajj and seemingly limited spread of subconsensus mutational variants. The diversity of viruses at the Hajj pilgrimages highlights the potential for lineage cocirculation during mass gatherings, in turn fuelling segment reassortment and the emergence of novel variants, such that the continued surveillance of respiratory pathogens at mass gatherings should be a public health priority. SN - 1098-5514 UR - https://www.unboundmedicine.com/medline/citation/28331081/Multiple_Sources_of_Genetic_Diversity_of_Influenza_A_Viruses_during_the_Hajj_ L2 - https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/28331081/ DB - PRIME DP - Unbound Medicine ER -