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Biological evaluation and energetic analyses of novel GSK-3β inhibitors.
J Cell Biochem. 2018 04; 119(4):3510-3518.JC

Abstract

Glycogen synthase kinase-3 beta (GSK-3β) is involved in multiple signaling pathways. Consistent with its critical roles in normal cells, abnormalities in GSK-3β activity have been implicated in diabetes, heart disease, Parkinson disease, and Alzheimer's disease. In this study, a series of new scaffolds of small molecule inhibitors of GSK-3β were identified by virtual screening and bioassay. Candidates that adhere to drug-like criteria from a virtual library of compounds were tested using computational docking studies. Twenty selected compounds were tested, which led to the discovery of two hits. Compound 14 (IC50 = 8.48 µM) and compound 19 (IC50 = 2.19 µM) were identified with high affinity. Molecular dynamics (MD) simulations, in conjunction with molecular mechanics/Poisson-Boltzmann surface area binding free-energy analysis, were employed to gain insight into the binding modes and energetics of GSK-3β inhibitors. The detailed analysis of molecular dynamics results shows that Ile62, Val70, Tyr134, and Leu188 in GSK-3β are key residues responsible to the binding of compound 14 and compound 19. Importantly, our results also validated this combined virtual screening and biophysical technique approach to discovery kinase inhibitors, which may be applied for future inhibitor discovery work for GSK-3β.

Authors+Show Affiliations

Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.Department of Pharmacogenomics, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, P. R. China.

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

29144001

Citation

Zhang, Denan, et al. "Biological Evaluation and Energetic Analyses of Novel GSK-3β Inhibitors." Journal of Cellular Biochemistry, vol. 119, no. 4, 2018, pp. 3510-3518.
Zhang D, Liu L, Pang L, et al. Biological evaluation and energetic analyses of novel GSK-3β inhibitors. J Cell Biochem. 2018;119(4):3510-3518.
Zhang, D., Liu, L., Pang, L., Jin, Q., Ke, K., Hu, M., Yang, J., Ma, W., Xie, H., & Chen, X. (2018). Biological evaluation and energetic analyses of novel GSK-3β inhibitors. Journal of Cellular Biochemistry, 119(4), 3510-3518. https://doi.org/10.1002/jcb.26522
Zhang D, et al. Biological Evaluation and Energetic Analyses of Novel GSK-3β Inhibitors. J Cell Biochem. 2018;119(4):3510-3518. PubMed PMID: 29144001.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Biological evaluation and energetic analyses of novel GSK-3β inhibitors. AU - Zhang,Denan, AU - Liu,Lei, AU - Pang,Lin, AU - Jin,Qing, AU - Ke,Kehui, AU - Hu,Ming, AU - Yang,Jingbo, AU - Ma,Weifang, AU - Xie,Hongbo, AU - Chen,Xiujie, Y1 - 2017/12/26/ PY - 2017/07/04/received PY - 2017/11/10/accepted PY - 2017/11/17/pubmed PY - 2018/10/17/medline PY - 2017/11/17/entrez KW - glycogen synthase kinase-3 beta KW - inhibitor KW - molecular simulation KW - virtual screening SP - 3510 EP - 3518 JF - Journal of cellular biochemistry JO - J Cell Biochem VL - 119 IS - 4 N2 - Glycogen synthase kinase-3 beta (GSK-3β) is involved in multiple signaling pathways. Consistent with its critical roles in normal cells, abnormalities in GSK-3β activity have been implicated in diabetes, heart disease, Parkinson disease, and Alzheimer's disease. In this study, a series of new scaffolds of small molecule inhibitors of GSK-3β were identified by virtual screening and bioassay. Candidates that adhere to drug-like criteria from a virtual library of compounds were tested using computational docking studies. Twenty selected compounds were tested, which led to the discovery of two hits. Compound 14 (IC50 = 8.48 µM) and compound 19 (IC50 = 2.19 µM) were identified with high affinity. Molecular dynamics (MD) simulations, in conjunction with molecular mechanics/Poisson-Boltzmann surface area binding free-energy analysis, were employed to gain insight into the binding modes and energetics of GSK-3β inhibitors. The detailed analysis of molecular dynamics results shows that Ile62, Val70, Tyr134, and Leu188 in GSK-3β are key residues responsible to the binding of compound 14 and compound 19. Importantly, our results also validated this combined virtual screening and biophysical technique approach to discovery kinase inhibitors, which may be applied for future inhibitor discovery work for GSK-3β. SN - 1097-4644 UR - https://www.unboundmedicine.com/medline/citation/29144001/Biological_evaluation_and_energetic_analyses_of_novel_GSK_3β_inhibitors_ DB - PRIME DP - Unbound Medicine ER -