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Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors.
Iran J Pharm Res. 2017 Summer; 16(3):910-923.IJ

Abstract

Phosphodiesterase 4 (PDE4) has been established as a promising target in asthma and chronic obstructive pulmonary disease. PDE4B subtype selective inhibitors are known to reduce the dose limiting adverse effect associated with non-selective PDE4B inhibitors. This makes the development of PDE4B subtype selective inhibitors a desirable research goal. To achieve this goal, ligand based pharmacophore modeling approach is employed. Separate pharmacophore hypotheses for PDE4B and PDE4D inhibitors were generated using HypoGen algorithm and 106 PDE4 inhibitors from literature having thiopyrano [3,2-d] Pyrimidines, 2-arylpyrimidines, and triazines skeleton. Suitable training and test sets were created using the molecules as per the guidelines available for HypoGen program. Training set was used for hypothesis development while test set was used for validation purpose. Fisher validation was also used to test the significance of the developed hypothesis. The validated pharmacophore hypotheses for PDE4B and PDE4D inhibitors were used in sequential virtual screening of zinc database of drug like molecules to identify selective PDE4B inhibitors. The hits were screened for their estimated activity and fit value. The top hit was subjected to docking into the active sites of PDE4B and PDE4D to confirm its selectivity for PDE4B. The hits are proposed to be evaluated further using in-vitro assays.

Authors+Show Affiliations

Faculty of Pharmaceutical Sciences, UCSI University, No. 1, UCSI Heights, Jalan Menara Gading, Taman Connaught, 56000 Kuala Lumpur, Federal Territory of Kuala Lumpur, Kuala Lumpur, Malaysia.Department of Chemistry, Faculty of Science, University of Malaya 50603, Kuala Lumpur, Malaysia.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

29201082

Citation

Gaurav, Anand, and Vertika Gautam. "Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors." Iranian Journal of Pharmaceutical Research : IJPR, vol. 16, no. 3, 2017, pp. 910-923.
Gaurav A, Gautam V. Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors. Iran J Pharm Res. 2017;16(3):910-923.
Gaurav, A., & Gautam, V. (2017). Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors. Iranian Journal of Pharmaceutical Research : IJPR, 16(3), 910-923.
Gaurav A, Gautam V. Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors. Iran J Pharm Res. 2017;16(3):910-923. PubMed PMID: 29201082.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Pharmacophore Based Virtual Screening Approach to Identify Selective PDE4B Inhibitors. AU - Gaurav,Anand, AU - Gautam,Vertika, PY - 2017/12/5/entrez PY - 2017/12/5/pubmed PY - 2017/12/5/medline KW - HypoGen KW - Pharmacophore KW - Phosphodiesterase 4 KW - Virtual screening KW - Zinc database KW - docking SP - 910 EP - 923 JF - Iranian journal of pharmaceutical research : IJPR JO - Iran J Pharm Res VL - 16 IS - 3 N2 - Phosphodiesterase 4 (PDE4) has been established as a promising target in asthma and chronic obstructive pulmonary disease. PDE4B subtype selective inhibitors are known to reduce the dose limiting adverse effect associated with non-selective PDE4B inhibitors. This makes the development of PDE4B subtype selective inhibitors a desirable research goal. To achieve this goal, ligand based pharmacophore modeling approach is employed. Separate pharmacophore hypotheses for PDE4B and PDE4D inhibitors were generated using HypoGen algorithm and 106 PDE4 inhibitors from literature having thiopyrano [3,2-d] Pyrimidines, 2-arylpyrimidines, and triazines skeleton. Suitable training and test sets were created using the molecules as per the guidelines available for HypoGen program. Training set was used for hypothesis development while test set was used for validation purpose. Fisher validation was also used to test the significance of the developed hypothesis. The validated pharmacophore hypotheses for PDE4B and PDE4D inhibitors were used in sequential virtual screening of zinc database of drug like molecules to identify selective PDE4B inhibitors. The hits were screened for their estimated activity and fit value. The top hit was subjected to docking into the active sites of PDE4B and PDE4D to confirm its selectivity for PDE4B. The hits are proposed to be evaluated further using in-vitro assays. SN - 1735-0328 UR - https://www.unboundmedicine.com/medline/citation/29201082/Pharmacophore_Based_Virtual_Screening_Approach_to_Identify_Selective_PDE4B_Inhibitors_ DB - PRIME DP - Unbound Medicine ER -
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