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Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia.
Data Brief. 2018 Aug; 19:2452-2454.DB

Abstract

Curcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most commercially important cultivars are hybrids that are propagated vegetatively. In spite of other flowering plants, there is still lack of transcriptomic-based data on the functions of genes related to flower color in C. alismatifolia. The raw data presented in this article provides information on new original transcriptome data of two cultivars of C. alismatifolia by Illumina Hiseq. 4000 RNA-Seq technology which is the first ever report about this plant. The data is accessible via European Nucleotide Archive (ENA) under project number PRJEB18956.

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Authors+Show Affiliations

Taheri S
Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
Abdullah TL
Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
Noor YM
Laboratory of Bioinformatics and Computational Biology, Malaysia Genome Institute, Jalan Bangi, 43000 Kajang, Selangor, Malaysia.
Padil HM
Laboratory of Bioinformatics and Computational Biology, Malaysia Genome Institute, Jalan Bangi, 43000 Kajang, Selangor, Malaysia.
Sahebi M
Laboratory of Climate-Smart Food Crop Production, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
Azizi P
Laboratory of Plantation Science and Technology, Institute of Plantation Studies, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

30246104

Citation

Taheri, Sima, et al. "Data of the First De Novo Transcriptome Assembly of the Inflorescence of Curcuma Alismatifolia." Data in Brief, vol. 19, 2018, pp. 2452-2454.
Taheri S, Abdullah TL, Noor YM, et al. Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia. Data Brief. 2018;19:2452-2454.
Taheri, S., Abdullah, T. L., Noor, Y. M., Padil, H. M., Sahebi, M., & Azizi, P. (2018). Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia. Data in Brief, 19, 2452-2454. https://doi.org/10.1016/j.dib.2018.07.038
Taheri S, et al. Data of the First De Novo Transcriptome Assembly of the Inflorescence of Curcuma Alismatifolia. Data Brief. 2018;19:2452-2454. PubMed PMID: 30246104.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Data of the first de novo transcriptome assembly of the inflorescence of Curcuma alismatifolia. AU - Taheri,Sima, AU - Abdullah,Thohirah Lee, AU - Noor,Yusuf Muhammad, AU - Padil,Hirzahida Mohd, AU - Sahebi,Mahbod, AU - Azizi,Parisa, Y1 - 2018/07/24/ PY - 2018/03/28/received PY - 2018/07/08/revised PY - 2018/07/18/accepted PY - 2018/9/25/entrez PY - 2018/9/25/pubmed PY - 2018/9/25/medline KW - Curcuma alismatifolia KW - De novo KW - Illumina KW - RNA-Seq KW - Transcriptome assembly SP - 2452 EP - 2454 JF - Data in brief JO - Data Brief VL - 19 N2 - Curcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most commercially important cultivars are hybrids that are propagated vegetatively. In spite of other flowering plants, there is still lack of transcriptomic-based data on the functions of genes related to flower color in C. alismatifolia. The raw data presented in this article provides information on new original transcriptome data of two cultivars of C. alismatifolia by Illumina Hiseq. 4000 RNA-Seq technology which is the first ever report about this plant. The data is accessible via European Nucleotide Archive (ENA) under project number PRJEB18956. SN - 2352-3409 UR - https://www.unboundmedicine.com/medline/citation/30246104/Data_of_the_first_de_novo_transcriptome_assembly_of_the_inflorescence_of_Curcuma_alismatifolia_ DB - PRIME DP - Unbound Medicine ER -