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Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method.
Data Brief 2019; 22:11-15DB

Abstract

We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication "A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems" (Drawert et al., 2019). We validate 1D diffusion, and 2D diffusion cases against their analytical solutions. We present graphs and tables of data showing the error in the simulation method.

Authors+Show Affiliations

Department of Computer Science, University of North Carolina at Asheville, Asheville, NC 28804, USA.Department of Mechanical Engineering, University of California - Santa Barbara, Santa Barbara, CA 93106, USA.Division of Applied Mathematics, Brown University, Providence, RI 02912, USA.Department of Molecular, Cellular, and Developmental Biology, University of California - Santa Barbara, Santa Barbara, CA 93106, USA.Department of Mechanical Engineering, University of California - Santa Barbara, Santa Barbara, CA 93106, USA. Department of Computer Science, University of California - Santa Barbara, Santa Barbara, CA 93106, USA.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

30581900

Citation

Drawert, Brian, et al. "Validation Data for a Hybrid Smoothed Dissipative Particle Dynamics (SDPD) Spatial Stochastic Simulation Algorithm (sSSA) Method." Data in Brief, vol. 22, 2019, pp. 11-15.
Drawert B, Jacob B, Li Z, et al. Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method. Data Brief. 2019;22:11-15.
Drawert, B., Jacob, B., Li, Z., Yi, T. M., & Petzold, L. (2019). Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method. Data in Brief, 22, pp. 11-15. doi:10.1016/j.dib.2018.11.103.
Drawert B, et al. Validation Data for a Hybrid Smoothed Dissipative Particle Dynamics (SDPD) Spatial Stochastic Simulation Algorithm (sSSA) Method. Data Brief. 2019;22:11-15. PubMed PMID: 30581900.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method. AU - Drawert,Brian, AU - Jacob,Bruno, AU - Li,Zhen, AU - Yi,Tau-Mu, AU - Petzold,Linda, Y1 - 2018/12/05/ PY - 2018/11/01/received PY - 2018/11/18/revised PY - 2018/11/20/accepted PY - 2018/12/25/entrez PY - 2018/12/26/pubmed PY - 2018/12/26/medline SP - 11 EP - 15 JF - Data in brief JO - Data Brief VL - 22 N2 - We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication "A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems" (Drawert et al., 2019). We validate 1D diffusion, and 2D diffusion cases against their analytical solutions. We present graphs and tables of data showing the error in the simulation method. SN - 2352-3409 UR - https://www.unboundmedicine.com/medline/citation/30581900/Validation_data_for_a_hybrid_smoothed_dissipative_particle_dynamics__SDPD__spatial_stochastic_simulation_algorithm__sSSA__method_ L2 - https://linkinghub.elsevier.com/retrieve/pii/S2352-3409(18)31496-3 DB - PRIME DP - Unbound Medicine ER -