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Identification of potential miRNA biomarkers for traumatic osteonecrosis of femoral head.
J Cell Physiol. 2020 11; 235(11):8129-8140.JC

Abstract

Traumatic osteonecrosis of femoral head (TONFH) is a common orthopedic disease caused by physical injury in hip. However, the unclear pathogenesis mechanism of TONFH and lacking of simple noninvasive early diagnosis method cause the necessity of hip replacement for most patients with TONFH. In this study, we aimed to identify circulating microRNAs (miRNAs) by integrated bioinformatics analyses as potential biomarker of TONFH. mRNA expression profiles were downloaded from the Gene Expression Omnibus database. Then we combined two miRNA screen methods: Weighted gene co-expression network analysis and fold change based differentially expressed miRNAs analysis. As a result, we identified 14 key miRNAs as potential biomarkers for TONFH. Besides, 302 target genes of these miRNAs were obtained and the miRNA-mRNA interaction network was constructed. Furthermore, the results of Kyoto Encyclopedia of Gene and Genome pathway analysis, Gene Ontology function analysis, protein-protein interaction (PPI) network analysis and PPI network module analysis showed close correlation between these 14 key miRNAs and TONFH. Then we established receiver operating characteristic curves and identified 6-miRNA signature with highly diagnosis value including miR-93-5p (area under the curve [AUC] = 0.93), miR-1324 (AUC = 0.92), miR-4666a-3p (AUC = 0.92), miR-5011-3p (AUC = 0.92), and miR-320a (AUC = 0.89), miR-185-5p (AUC = 0.89). Finally, the results of quantitative real-time polymerase chain reaction confirmed the significantly higher expression of miR-93-5p and miR-320a in the serum of patients with ONFH. These circulating miRNAs could serve as candidate early diagnosis markers and potential treatment targets of TONFH.

Authors+Show Affiliations

Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Department of Cardiovascular Medicine, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.Bone and Joint Surgery Center, Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

31951022

Citation

Liu, Guan-Zhi, et al. "Identification of Potential miRNA Biomarkers for Traumatic Osteonecrosis of Femoral Head." Journal of Cellular Physiology, vol. 235, no. 11, 2020, pp. 8129-8140.
Liu GZ, Chen C, Kong N, et al. Identification of potential miRNA biomarkers for traumatic osteonecrosis of femoral head. J Cell Physiol. 2020;235(11):8129-8140.
Liu, G. Z., Chen, C., Kong, N., Tian, R., Li, Y. Y., Li, Z., Wang, K. Z., & Yang, P. (2020). Identification of potential miRNA biomarkers for traumatic osteonecrosis of femoral head. Journal of Cellular Physiology, 235(11), 8129-8140. https://doi.org/10.1002/jcp.29467
Liu GZ, et al. Identification of Potential miRNA Biomarkers for Traumatic Osteonecrosis of Femoral Head. J Cell Physiol. 2020;235(11):8129-8140. PubMed PMID: 31951022.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Identification of potential miRNA biomarkers for traumatic osteonecrosis of femoral head. AU - Liu,Guan-Zhi, AU - Chen,Chen, AU - Kong,Ning, AU - Tian,Run, AU - Li,Yi-Yang, AU - Li,Zhe, AU - Wang,Kun-Zheng, AU - Yang,Pei, Y1 - 2020/01/17/ PY - 2019/05/31/received PY - 2020/01/07/accepted PY - 2020/1/18/pubmed PY - 2021/3/13/medline PY - 2020/1/18/entrez KW - biomarkers KW - microRNA expression KW - traumatic osteonecrosis of the femoral head KW - weighted gene co-expression network analysis SP - 8129 EP - 8140 JF - Journal of cellular physiology JO - J Cell Physiol VL - 235 IS - 11 N2 - Traumatic osteonecrosis of femoral head (TONFH) is a common orthopedic disease caused by physical injury in hip. However, the unclear pathogenesis mechanism of TONFH and lacking of simple noninvasive early diagnosis method cause the necessity of hip replacement for most patients with TONFH. In this study, we aimed to identify circulating microRNAs (miRNAs) by integrated bioinformatics analyses as potential biomarker of TONFH. mRNA expression profiles were downloaded from the Gene Expression Omnibus database. Then we combined two miRNA screen methods: Weighted gene co-expression network analysis and fold change based differentially expressed miRNAs analysis. As a result, we identified 14 key miRNAs as potential biomarkers for TONFH. Besides, 302 target genes of these miRNAs were obtained and the miRNA-mRNA interaction network was constructed. Furthermore, the results of Kyoto Encyclopedia of Gene and Genome pathway analysis, Gene Ontology function analysis, protein-protein interaction (PPI) network analysis and PPI network module analysis showed close correlation between these 14 key miRNAs and TONFH. Then we established receiver operating characteristic curves and identified 6-miRNA signature with highly diagnosis value including miR-93-5p (area under the curve [AUC] = 0.93), miR-1324 (AUC = 0.92), miR-4666a-3p (AUC = 0.92), miR-5011-3p (AUC = 0.92), and miR-320a (AUC = 0.89), miR-185-5p (AUC = 0.89). Finally, the results of quantitative real-time polymerase chain reaction confirmed the significantly higher expression of miR-93-5p and miR-320a in the serum of patients with ONFH. These circulating miRNAs could serve as candidate early diagnosis markers and potential treatment targets of TONFH. SN - 1097-4652 UR - https://www.unboundmedicine.com/medline/citation/31951022/Identification_of_potential_miRNA_biomarkers_for_traumatic_osteonecrosis_of_femoral_head_ DB - PRIME DP - Unbound Medicine ER -