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Spectra in low-rank localized layers (SpeLLL) for interpretable time-frequency analysis.
Biometrics. 2023 03; 79(1):304-318.B

Abstract

The time-varying frequency characteristics of many biomedical time series contain important scientific information. However, the high-dimensional nature of the time-varying power spectrum as a surface in time and frequency limits its direct use by applied researchers and clinicians for elucidating complex mechanisms. In this article, we introduce a new approach to time-frequency analysis that decomposes the time-varying power spectrum in to orthogonal rank-one layers in time and frequency to provide a parsimonious representation that illustrates relationships between power at different times and frequencies. The approach can be used in fully nonparametric analyses or in semiparametric analyses that account for exogenous information and time-varying covariates. An estimation procedure is formulated within a penalized reduced-rank regression framework that provides estimates of layers that are interpretable as power localized within time blocks and frequency bands. Empirical properties of the procedure are illustrated in simulation studies and its practical use is demonstrated through an analysis of heart rate variability during sleep.

Authors+Show Affiliations

Statistical Sciences, Sandia National Laboratories, Albuquerque, New Mexico. Department of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania.Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania.Department of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania. Department of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia.

Pub Type(s)

Journal Article
Research Support, N.I.H., Extramural

Language

eng

PubMed ID

34609738

Citation

Tuft, Marie, et al. "Spectra in Low-rank Localized Layers (SpeLLL) for Interpretable Time-frequency Analysis." Biometrics, vol. 79, no. 1, 2023, pp. 304-318.
Tuft M, Hall MH, Krafty RT. Spectra in low-rank localized layers (SpeLLL) for interpretable time-frequency analysis. Biometrics. 2023;79(1):304-318.
Tuft, M., Hall, M. H., & Krafty, R. T. (2023). Spectra in low-rank localized layers (SpeLLL) for interpretable time-frequency analysis. Biometrics, 79(1), 304-318. https://doi.org/10.1111/biom.13577
Tuft M, Hall MH, Krafty RT. Spectra in Low-rank Localized Layers (SpeLLL) for Interpretable Time-frequency Analysis. Biometrics. 2023;79(1):304-318. PubMed PMID: 34609738.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Spectra in low-rank localized layers (SpeLLL) for interpretable time-frequency analysis. AU - Tuft,Marie, AU - Hall,Martica H, AU - Krafty,Robert T, Y1 - 2021/10/28/ PY - 2021/07/25/revised PY - 2020/12/27/received PY - 2024/03/01/pmc-release PY - 2021/10/6/pubmed PY - 2023/3/25/medline PY - 2021/10/5/entrez KW - adaptive penalized estimation KW - heart rate variability KW - locally stationary KW - reduced-rank regression KW - spectrum analysis SP - 304 EP - 318 JF - Biometrics JO - Biometrics VL - 79 IS - 1 N2 - The time-varying frequency characteristics of many biomedical time series contain important scientific information. However, the high-dimensional nature of the time-varying power spectrum as a surface in time and frequency limits its direct use by applied researchers and clinicians for elucidating complex mechanisms. In this article, we introduce a new approach to time-frequency analysis that decomposes the time-varying power spectrum in to orthogonal rank-one layers in time and frequency to provide a parsimonious representation that illustrates relationships between power at different times and frequencies. The approach can be used in fully nonparametric analyses or in semiparametric analyses that account for exogenous information and time-varying covariates. An estimation procedure is formulated within a penalized reduced-rank regression framework that provides estimates of layers that are interpretable as power localized within time blocks and frequency bands. Empirical properties of the procedure are illustrated in simulation studies and its practical use is demonstrated through an analysis of heart rate variability during sleep. SN - 1541-0420 UR - https://www.unboundmedicine.com/medline/citation/34609738/Spectra_in_low_rank_localized_layers__SpeLLL__for_interpretable_time_frequency_analysis_ DB - PRIME DP - Unbound Medicine ER -
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