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Statistical approach to segmentation of single-channel cerebral MR images.
IEEE Trans Med Imaging. 1997 Apr; 16(2):176-86.IT

Abstract

A statistical model is presented that represents the distributions of major tissue classes in single-channel magnetic resonance (MR) cerebral images. Using the model, cerebral images are segmented into gray matter, white matter, and cerebrospinal fluid (CSF). The model accounts for random noise, magnetic field inhomogeneities, and biological variations of the tissues. Intensity measurements are modeled by a finite Gaussian mixture. Smoothness and piecewise contiguous nature of the tissue regions are modeled by a three-dimensional (3-D) Markov random field (MRF). A segmentation algorithm, based on the statistical model, approximately finds the maximum a posteriori (MAP) estimation of the segmentation and estimates the model parameters from the image data. The proposed scheme for segmentation is based on the iterative conditional modes (ICM) algorithm in which measurement model parameters are estimated using local information at each site, and the prior model parameters are estimated using the segmentation after each cycle of iterations. Application of the algorithm to a sample of clinical MR brain scans, comparisons of the algorithm with other statistical methods, and a validation study with a phantom are presented. The algorithm constitutes a significant step toward a complete data driven unsupervised approach to segmentation of MR images in the presence of the random noise and intensity inhomogeneities.

Authors+Show Affiliations

Child Psychiatry Branch, National Institute of Mental Health, Bethesda, MD 20892-1600, USA. jcr@helix.nih.govNo affiliation info availableNo affiliation info available

Pub Type(s)

Comparative Study
Journal Article

Language

eng

PubMed ID

9101327

Citation

Rajapakse, J C., et al. "Statistical Approach to Segmentation of Single-channel Cerebral MR Images." IEEE Transactions On Medical Imaging, vol. 16, no. 2, 1997, pp. 176-86.
Rajapakse JC, Giedd JN, Rapoport JL. Statistical approach to segmentation of single-channel cerebral MR images. IEEE Trans Med Imaging. 1997;16(2):176-86.
Rajapakse, J. C., Giedd, J. N., & Rapoport, J. L. (1997). Statistical approach to segmentation of single-channel cerebral MR images. IEEE Transactions On Medical Imaging, 16(2), 176-86.
Rajapakse JC, Giedd JN, Rapoport JL. Statistical Approach to Segmentation of Single-channel Cerebral MR Images. IEEE Trans Med Imaging. 1997;16(2):176-86. PubMed PMID: 9101327.
* Article titles in AMA citation format should be in sentence-case
TY - JOUR T1 - Statistical approach to segmentation of single-channel cerebral MR images. AU - Rajapakse,J C, AU - Giedd,J N, AU - Rapoport,J L, PY - 1997/4/1/pubmed PY - 1997/4/1/medline PY - 1997/4/1/entrez SP - 176 EP - 86 JF - IEEE transactions on medical imaging JO - IEEE Trans Med Imaging VL - 16 IS - 2 N2 - A statistical model is presented that represents the distributions of major tissue classes in single-channel magnetic resonance (MR) cerebral images. Using the model, cerebral images are segmented into gray matter, white matter, and cerebrospinal fluid (CSF). The model accounts for random noise, magnetic field inhomogeneities, and biological variations of the tissues. Intensity measurements are modeled by a finite Gaussian mixture. Smoothness and piecewise contiguous nature of the tissue regions are modeled by a three-dimensional (3-D) Markov random field (MRF). A segmentation algorithm, based on the statistical model, approximately finds the maximum a posteriori (MAP) estimation of the segmentation and estimates the model parameters from the image data. The proposed scheme for segmentation is based on the iterative conditional modes (ICM) algorithm in which measurement model parameters are estimated using local information at each site, and the prior model parameters are estimated using the segmentation after each cycle of iterations. Application of the algorithm to a sample of clinical MR brain scans, comparisons of the algorithm with other statistical methods, and a validation study with a phantom are presented. The algorithm constitutes a significant step toward a complete data driven unsupervised approach to segmentation of MR images in the presence of the random noise and intensity inhomogeneities. SN - 0278-0062 UR - https://www.unboundmedicine.com/medline/citation/9101327/Statistical_approach_to_segmentation_of_single_channel_cerebral_MR_images_ L2 - https://dx.doi.org/10.1109/42.563663 DB - PRIME DP - Unbound Medicine ER -