Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA.
J Biol Chem. 2002 May 10; 277(19):16614-23.JB

Abstract

Splicing of the chicken beta-tropomyosin exon 6A is stimulated, both in vivo and in vitro, by an intronic pyrimidine-rich element (S4) located 37 nucleotides downstream of exon 6A. Several pyrimidine-rich sequences are able to substitute for the natural S4 enhancer with various stimulatory effects. We show that the different enhancer sequences recruit U1 small nuclear ribonucleoprotein (SnRNP) to the exon 6A 5' splice site, with an efficiency that correlates with the splicing activation. By using RNA affinity and two-dimensional gel electrophoresis, we characterized several proteins that bind to the different enhancer sequences. Heterogeneous nuclear ribonucleoprotein (hnRNP) K and hnRNP I (polypyrimidine track-binding protein, PTB) exhibit a higher level of interaction with the strong enhancer sequences (S4) than with the weakest enhancers. Functional analysis shows that hnRNP K is a component of the enhancer complex that promotes exon 6A splicing through the wild-type S4 sequence. The addition of recombinant hnRNP K to nuclear extracts preincubated with poly(rC) RNA competitor completely restores splicing efficiency to the original level. hnRNP I (PTB) was also found associated with the strong enhancer sequences. Its function in the splicing of exon 6A is discussed.

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Authors+Show Affiliations

Expert-Bezançon A
Centre de Génétique Moléculaire, CNRS, F-91190 Gif-sur-Yvette, France.
Le Caer JP
No affiliation info available
Marie J
No affiliation info available

MeSH

Alternative SplicingAnimalsBase SequenceBinding, CompetitiveCell NucleusChickensCross-Linking ReagentsElectrophoresis, Gel, Two-DimensionalEnhancer Elements, GeneticEscherichia coliExonsHeLa CellsHeterogeneous-Nuclear Ribonucleoprotein KHeterogeneous-Nuclear RibonucleoproteinsHumansIntronsMass SpectrometryMolecular Sequence DataPlasmidsPoly CProtein BindingRNARNA, MessengerRecombinant ProteinsRibonucleoproteinsTropomyosinUltraviolet Rays

Pub Type(s)

Journal Article
Research Support, Non-U.S. Gov't

Language

eng

PubMed ID

11867641