A microRNA expression signature in infant t(4;11) KMT2A::AFF1+ BCP-ALL uncovers novel therapeutic targets.
Hemasphere 2026 Apr; 10(4):e70353.

Abstract

Infants and children with KMT2A::AFF1+ leukemia have a dismal prognosis and are therefore in urgent need for more efficient and less aggressive therapy. In this study, we investigated three microRNAs that are downregulated in KMT2A::AFF1+ B-cell precursor acute lymphoblastic leukemia (BCP-ALL): miR-194, miR-99b, and miR-125a-5p. When overexpressed, all three microRNAs impaired the survival of KMT2A::AFF1+ leukemic blasts and the maintenance of KMT2A::AFF1+ BCP-ALL. We identified microRNA target genes responsible for this phenotype that are upregulated in KMT2A::AFF1+ BCP-ALL: CA5B, PPP3CA, and PPP2R5C. Importantly, using a drug-repurposing approach, we found that inhibition of CA5B, PPP3CA, and PP2A by acetazolamide, tacrolimus, and LB-100, respectively, showed high toxicity toward KMT2A::AFF1+ leukemic blasts and reduced leukemia burden in vivo. Furthermore, acetazolamide was able to prolong the survival of patient-derived xenotransplant models in combination with infant ALL induction therapy. This study highlights how the unique microRNA expression signature of patients with KMT2A::AFF1+ BCP-ALL can be used to uncover novel therapeutic avenues and accelerate drug repurposing. It also indicates potential new drug combinations for less toxic chemotherapy.

Authors+Show Affiliations

Malouf C0000-0002-1066-8376Centre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Duguid ACentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Vrenken KSPrincess Máxima Center for Pediatric Oncology Utrecht The Netherlands.
Leah TCentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Medhi RCentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Camiolo GCentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Nitsche LCentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Jakobczyk HCentre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Kotecha RSLeukaemia Translational Research Laboratory, Telethon Kids Cancer Centre, Telethon Kids Institute University of Western Australia Perth Western Australia Australia. Curtin Medical School Curtin University Perth Western Australia Australia. Department of Clinical Haematology, Oncology, Blood and Marrow, Transplantation Perth Children's Hospital Perth Western Australia Australia.
Anderson RACentre for Reproductive Health, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.
Barrett NADepartment of Haematology Children's Health Ireland Dublin Ireland.
Smith OPNational Children's Cancer Service Children's Health Ireland Dublin Ireland. Trinity College Dublin Dublin Ireland.
Stam RWPrincess Máxima Center for Pediatric Oncology Utrecht The Netherlands.
Ottersbach K0000-0002-6880-4895Centre for Regenerative Medicine, Institute for Regeneration and Repair University of Edinburgh Edinburgh UK.

Pub Type(s)

Journal Article

Language

eng

PubMed ID

42038742